meilisearch/milli/src/update/delete_documents.rs

540 lines
22 KiB
Rust
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use std::collections::btree_map::Entry;
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use std::collections::HashMap;
use chrono::Utc;
use fst::IntoStreamer;
use heed::types::ByteSlice;
use roaring::RoaringBitmap;
use serde_json::Value;
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use super::ClearDocuments;
use crate::error::{FieldIdMapMissingEntry, InternalError, UserError};
use crate::heed_codec::CboRoaringBitmapCodec;
use crate::index::{db_name, main_key};
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use crate::{DocumentId, ExternalDocumentsIds, FieldId, Index, Result, SmallString32, BEU32};
pub struct DeleteDocuments<'t, 'u, 'i> {
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wtxn: &'t mut heed::RwTxn<'i, 'u>,
index: &'i Index,
external_documents_ids: ExternalDocumentsIds<'static>,
documents_ids: RoaringBitmap,
update_id: u64,
}
impl<'t, 'u, 'i> DeleteDocuments<'t, 'u, 'i> {
pub fn new(
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wtxn: &'t mut heed::RwTxn<'i, 'u>,
index: &'i Index,
update_id: u64,
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) -> Result<DeleteDocuments<'t, 'u, 'i>> {
let external_documents_ids = index.external_documents_ids(wtxn)?.into_static();
Ok(DeleteDocuments {
wtxn,
index,
external_documents_ids,
documents_ids: RoaringBitmap::new(),
update_id,
})
}
pub fn delete_document(&mut self, docid: u32) {
self.documents_ids.insert(docid);
}
pub fn delete_documents(&mut self, docids: &RoaringBitmap) {
self.documents_ids |= docids;
}
pub fn delete_external_id(&mut self, external_id: &str) -> Option<u32> {
let docid = self.external_documents_ids.get(external_id)?;
self.delete_document(docid);
Some(docid)
}
pub fn execute(self) -> Result<u64> {
self.index.set_updated_at(self.wtxn, &Utc::now())?;
// We retrieve the current documents ids that are in the database.
let mut documents_ids = self.index.documents_ids(self.wtxn)?;
// We can and must stop removing documents in a database that is empty.
if documents_ids.is_empty() {
return Ok(0);
}
// We remove the documents ids that we want to delete
// from the documents in the database and write them back.
let current_documents_ids_len = documents_ids.len();
documents_ids -= &self.documents_ids;
self.index.put_documents_ids(self.wtxn, &documents_ids)?;
// We can execute a ClearDocuments operation when the number of documents
// to delete is exactly the number of documents in the database.
if current_documents_ids_len == self.documents_ids.len() {
return ClearDocuments::new(self.wtxn, self.index, self.update_id).execute();
}
let fields_ids_map = self.index.fields_ids_map(self.wtxn)?;
let primary_key = self.index.primary_key(self.wtxn)?.ok_or_else(|| {
InternalError::DatabaseMissingEntry {
db_name: db_name::MAIN,
key: Some(main_key::PRIMARY_KEY_KEY),
}
})?;
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let id_field =
fields_ids_map.id(primary_key).ok_or_else(|| FieldIdMapMissingEntry::FieldName {
field_name: primary_key.to_string(),
process: "DeleteDocuments::execute",
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})?;
let Index {
env: _env,
main: _main,
word_docids,
word_prefix_docids,
docid_word_positions,
word_pair_proximity_docids,
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field_id_word_count_docids,
word_prefix_pair_proximity_docids,
word_level_position_docids,
word_prefix_level_position_docids,
facet_id_f64_docids,
facet_id_string_docids,
field_id_docid_facet_f64s,
field_id_docid_facet_strings,
documents,
} = self.index;
// Number of fields for each document that has been deleted.
let mut fields_ids_distribution_diff = HashMap::new();
// Retrieve the words and the external documents ids contained in the documents.
let mut words = Vec::new();
let mut external_ids = Vec::new();
for docid in &self.documents_ids {
// We create an iterator to be able to get the content and delete the document
// content itself. It's faster to acquire a cursor to get and delete,
// as we avoid traversing the LMDB B-Tree two times but only once.
let key = BEU32::new(docid);
let mut iter = documents.range_mut(self.wtxn, &(key..=key))?;
if let Some((_key, obkv)) = iter.next().transpose()? {
for (field_id, _) in obkv.iter() {
*fields_ids_distribution_diff.entry(field_id).or_default() += 1;
}
if let Some(content) = obkv.get(id_field) {
let external_id = match serde_json::from_slice(content).unwrap() {
Value::String(string) => SmallString32::from(string.as_str()),
Value::Number(number) => SmallString32::from(number.to_string()),
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document_id => {
return Err(UserError::InvalidDocumentId { document_id }.into())
}
};
external_ids.push(external_id);
}
// safety: we don't keep references from inside the LMDB database.
unsafe { iter.del_current()? };
}
drop(iter);
// We iterate through the words positions of the document id,
// retrieve the word and delete the positions.
let mut iter = docid_word_positions.prefix_iter_mut(self.wtxn, &(docid, ""))?;
while let Some(result) = iter.next() {
let ((_docid, word), _positions) = result?;
// This boolean will indicate if we must remove this word from the words FST.
words.push((SmallString32::from(word), false));
// safety: we don't keep references from inside the LMDB database.
unsafe { iter.del_current()? };
}
}
let mut field_distribution = self.index.field_distribution(self.wtxn)?;
// We use pre-calculated number of fields occurrences that needs to be deleted
// to reflect deleted documents.
// If all field occurrences are removed, delete the entry from distribution.
// Otherwise, insert new number of occurrences (current_count - count_diff).
for (field_id, count_diff) in fields_ids_distribution_diff {
let field_name = fields_ids_map.name(field_id).unwrap();
if let Entry::Occupied(mut entry) = field_distribution.entry(field_name.to_string()) {
match entry.get().checked_sub(count_diff) {
Some(0) | None => entry.remove(),
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Some(count) => entry.insert(count),
};
}
}
self.index.put_field_distribution(self.wtxn, &field_distribution)?;
// We create the FST map of the external ids that we must delete.
external_ids.sort_unstable();
let external_ids_to_delete = fst::Set::from_iter(external_ids.iter().map(AsRef::as_ref))?;
// We acquire the current external documents ids map...
let mut new_external_documents_ids = self.index.external_documents_ids(self.wtxn)?;
// ...and remove the to-delete external ids.
new_external_documents_ids.delete_ids(external_ids_to_delete)?;
// We write the new external ids into the main database.
let new_external_documents_ids = new_external_documents_ids.into_static();
self.index.put_external_documents_ids(self.wtxn, &new_external_documents_ids)?;
// Maybe we can improve the get performance of the words
// if we sort the words first, keeping the LMDB pages in cache.
words.sort_unstable();
// We iterate over the words and delete the documents ids
// from the word docids database.
for (word, must_remove) in &mut words {
// We create an iterator to be able to get the content and delete the word docids.
// It's faster to acquire a cursor to get and delete or put, as we avoid traversing
// the LMDB B-Tree two times but only once.
let mut iter = word_docids.prefix_iter_mut(self.wtxn, &word)?;
if let Some((key, mut docids)) = iter.next().transpose()? {
if key == word.as_ref() {
let previous_len = docids.len();
docids -= &self.documents_ids;
if docids.is_empty() {
// safety: we don't keep references from inside the LMDB database.
unsafe { iter.del_current()? };
*must_remove = true;
} else if docids.len() != previous_len {
let key = key.to_owned();
// safety: we don't keep references from inside the LMDB database.
unsafe { iter.put_current(&key, &docids)? };
}
}
}
}
// We construct an FST set that contains the words to delete from the words FST.
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let words_to_delete =
words.iter().filter_map(
|(word, must_remove)| {
if *must_remove {
Some(word.as_ref())
} else {
None
}
},
);
let words_to_delete = fst::Set::from_iter(words_to_delete)?;
let new_words_fst = {
// We retrieve the current words FST from the database.
let words_fst = self.index.words_fst(self.wtxn)?;
let difference = words_fst.op().add(&words_to_delete).difference();
// We stream the new external ids that does no more contains the to-delete external ids.
let mut new_words_fst_builder = fst::SetBuilder::memory();
new_words_fst_builder.extend_stream(difference.into_stream())?;
// We create an words FST set from the above builder.
new_words_fst_builder.into_set()
};
// We write the new words FST into the main database.
self.index.put_words_fst(self.wtxn, &new_words_fst)?;
// We iterate over the word prefix docids database and remove the deleted documents ids
// from every docids lists. We register the empty prefixes in an fst Set for futur deletion.
let mut prefixes_to_delete = fst::SetBuilder::memory();
let mut iter = word_prefix_docids.iter_mut(self.wtxn)?;
while let Some(result) = iter.next() {
let (prefix, mut docids) = result?;
let prefix = prefix.to_owned();
let previous_len = docids.len();
docids -= &self.documents_ids;
if docids.is_empty() {
// safety: we don't keep references from inside the LMDB database.
unsafe { iter.del_current()? };
prefixes_to_delete.insert(prefix)?;
} else if docids.len() != previous_len {
// safety: we don't keep references from inside the LMDB database.
unsafe { iter.put_current(&prefix, &docids)? };
}
}
drop(iter);
// We compute the new prefix FST and write it only if there is a change.
let prefixes_to_delete = prefixes_to_delete.into_set();
if !prefixes_to_delete.is_empty() {
let new_words_prefixes_fst = {
// We retrieve the current words prefixes FST from the database.
let words_prefixes_fst = self.index.words_prefixes_fst(self.wtxn)?;
let difference = words_prefixes_fst.op().add(&prefixes_to_delete).difference();
// We stream the new external ids that does no more contains the to-delete external ids.
let mut new_words_prefixes_fst_builder = fst::SetBuilder::memory();
new_words_prefixes_fst_builder.extend_stream(difference.into_stream())?;
// We create an words FST set from the above builder.
new_words_prefixes_fst_builder.into_set()
};
// We write the new words prefixes FST into the main database.
self.index.put_words_prefixes_fst(self.wtxn, &new_words_prefixes_fst)?;
}
// We delete the documents ids from the word prefix pair proximity database docids
// and remove the empty pairs too.
let db = word_prefix_pair_proximity_docids.remap_key_type::<ByteSlice>();
let mut iter = db.iter_mut(self.wtxn)?;
while let Some(result) = iter.next() {
let (key, mut docids) = result?;
let previous_len = docids.len();
docids -= &self.documents_ids;
if docids.is_empty() {
// safety: we don't keep references from inside the LMDB database.
unsafe { iter.del_current()? };
} else if docids.len() != previous_len {
let key = key.to_owned();
// safety: we don't keep references from inside the LMDB database.
unsafe { iter.put_current(&key, &docids)? };
}
}
drop(iter);
// We delete the documents ids that are under the pairs of words,
// it is faster and use no memory to iterate over all the words pairs than
// to compute the cartesian product of every words of the deleted documents.
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let mut iter =
word_pair_proximity_docids.remap_key_type::<ByteSlice>().iter_mut(self.wtxn)?;
while let Some(result) = iter.next() {
let (bytes, mut docids) = result?;
let previous_len = docids.len();
docids -= &self.documents_ids;
if docids.is_empty() {
// safety: we don't keep references from inside the LMDB database.
unsafe { iter.del_current()? };
} else if docids.len() != previous_len {
let bytes = bytes.to_owned();
// safety: we don't keep references from inside the LMDB database.
unsafe { iter.put_current(&bytes, &docids)? };
}
}
drop(iter);
// We delete the documents ids that are under the word level position docids.
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let mut iter =
word_level_position_docids.iter_mut(self.wtxn)?.remap_key_type::<ByteSlice>();
while let Some(result) = iter.next() {
let (bytes, mut docids) = result?;
let previous_len = docids.len();
docids -= &self.documents_ids;
if docids.is_empty() {
// safety: we don't keep references from inside the LMDB database.
unsafe { iter.del_current()? };
} else if docids.len() != previous_len {
let bytes = bytes.to_owned();
// safety: we don't keep references from inside the LMDB database.
unsafe { iter.put_current(&bytes, &docids)? };
}
}
drop(iter);
// We delete the documents ids that are under the word prefix level position docids.
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let mut iter =
word_prefix_level_position_docids.iter_mut(self.wtxn)?.remap_key_type::<ByteSlice>();
while let Some(result) = iter.next() {
let (bytes, mut docids) = result?;
let previous_len = docids.len();
docids -= &self.documents_ids;
if docids.is_empty() {
// safety: we don't keep references from inside the LMDB database.
unsafe { iter.del_current()? };
} else if docids.len() != previous_len {
let bytes = bytes.to_owned();
// safety: we don't keep references from inside the LMDB database.
unsafe { iter.put_current(&bytes, &docids)? };
}
}
drop(iter);
// Remove the documents ids from the field id word count database.
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let mut iter = field_id_word_count_docids.iter_mut(self.wtxn)?;
while let Some((key, mut docids)) = iter.next().transpose()? {
let previous_len = docids.len();
docids -= &self.documents_ids;
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if docids.is_empty() {
// safety: we don't keep references from inside the LMDB database.
unsafe { iter.del_current()? };
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} else if docids.len() != previous_len {
// safety: we don't keep references from inside the LMDB database.
unsafe { iter.put_current(&key, &docids)? };
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}
}
drop(iter);
// We delete the documents ids that are under the facet field id values.
remove_docids_from_facet_field_id_value_docids(
self.wtxn,
facet_id_f64_docids,
&self.documents_ids,
)?;
remove_docids_from_facet_field_id_value_docids(
self.wtxn,
facet_id_string_docids,
&self.documents_ids,
)?;
// Remove the documents ids from the faceted documents ids.
for field_id in self.index.faceted_fields_ids(self.wtxn)? {
// Remove docids from the number faceted documents ids
let mut docids = self.index.number_faceted_documents_ids(self.wtxn, field_id)?;
docids -= &self.documents_ids;
self.index.put_number_faceted_documents_ids(self.wtxn, field_id, &docids)?;
remove_docids_from_field_id_docid_facet_value(
self.wtxn,
field_id_docid_facet_f64s,
field_id,
&self.documents_ids,
|(_fid, docid, _value)| docid,
)?;
// Remove docids from the string faceted documents ids
let mut docids = self.index.string_faceted_documents_ids(self.wtxn, field_id)?;
docids -= &self.documents_ids;
self.index.put_string_faceted_documents_ids(self.wtxn, field_id, &docids)?;
remove_docids_from_field_id_docid_facet_value(
self.wtxn,
field_id_docid_facet_strings,
field_id,
&self.documents_ids,
|(_fid, docid, _value)| docid,
)?;
}
Ok(self.documents_ids.len())
}
}
fn remove_docids_from_field_id_docid_facet_value<'a, C, K, F, DC, V>(
wtxn: &'a mut heed::RwTxn,
db: &heed::Database<C, DC>,
field_id: FieldId,
to_remove: &RoaringBitmap,
convert: F,
) -> heed::Result<()>
where
C: heed::BytesDecode<'a, DItem = K>,
DC: heed::BytesDecode<'a, DItem = V>,
F: Fn(K) -> DocumentId,
{
let mut iter = db
.remap_key_type::<ByteSlice>()
.prefix_iter_mut(wtxn, &field_id.to_be_bytes())?
.remap_key_type::<C>();
while let Some(result) = iter.next() {
let (key, _) = result?;
if to_remove.contains(convert(key)) {
// safety: we don't keep references from inside the LMDB database.
unsafe { iter.del_current()? };
}
}
Ok(())
}
fn remove_docids_from_facet_field_id_value_docids<'a, C>(
wtxn: &'a mut heed::RwTxn,
db: &heed::Database<C, CboRoaringBitmapCodec>,
to_remove: &RoaringBitmap,
) -> heed::Result<()>
where
C: heed::BytesDecode<'a> + heed::BytesEncode<'a>,
{
let mut iter = db.remap_key_type::<ByteSlice>().iter_mut(wtxn)?;
while let Some(result) = iter.next() {
let (bytes, mut docids) = result?;
let previous_len = docids.len();
docids -= to_remove;
if docids.is_empty() {
// safety: we don't keep references from inside the LMDB database.
unsafe { iter.del_current()? };
} else if docids.len() != previous_len {
let bytes = bytes.to_owned();
// safety: we don't keep references from inside the LMDB database.
unsafe { iter.put_current(&bytes, &docids)? };
}
}
Ok(())
}
#[cfg(test)]
mod tests {
use heed::EnvOpenOptions;
use super::*;
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use crate::update::{IndexDocuments, UpdateFormat};
#[test]
fn delete_documents_with_numbers_as_primary_key() {
let path = tempfile::tempdir().unwrap();
let mut options = EnvOpenOptions::new();
options.map_size(10 * 1024 * 1024); // 10 MB
let index = Index::new(options, &path).unwrap();
let mut wtxn = index.write_txn().unwrap();
let content = &br#"[
{ "id": 0, "name": "kevin", "object": { "key1": "value1", "key2": "value2" } },
{ "id": 1, "name": "kevina", "array": ["I", "am", "fine"] },
{ "id": 2, "name": "benoit", "array_of_object": [{ "wow": "amazing" }] }
]"#[..];
let mut builder = IndexDocuments::new(&mut wtxn, &index, 0);
builder.update_format(UpdateFormat::Json);
builder.execute(content, |_, _| ()).unwrap();
// delete those documents, ids are synchronous therefore 0, 1, and 2.
let mut builder = DeleteDocuments::new(&mut wtxn, &index, 1).unwrap();
builder.delete_document(0);
builder.delete_document(1);
builder.delete_document(2);
builder.execute().unwrap();
wtxn.commit().unwrap();
let rtxn = index.read_txn().unwrap();
assert!(index.field_distribution(&rtxn).unwrap().is_empty());
}
#[test]
fn delete_documents_with_strange_primary_key() {
let path = tempfile::tempdir().unwrap();
let mut options = EnvOpenOptions::new();
options.map_size(10 * 1024 * 1024); // 10 MB
let index = Index::new(options, &path).unwrap();
let mut wtxn = index.write_txn().unwrap();
let content = &br#"[
{ "mysuperid": 0, "name": "kevin" },
{ "mysuperid": 1, "name": "kevina" },
{ "mysuperid": 2, "name": "benoit" }
]"#[..];
let mut builder = IndexDocuments::new(&mut wtxn, &index, 0);
builder.update_format(UpdateFormat::Json);
builder.execute(content, |_, _| ()).unwrap();
// Delete not all of the documents but some of them.
let mut builder = DeleteDocuments::new(&mut wtxn, &index, 1).unwrap();
builder.delete_external_id("0");
builder.delete_external_id("1");
builder.execute().unwrap();
wtxn.commit().unwrap();
}
}