use std::convert::TryFrom; use std::fs::File; use std::iter::FromIterator; use std::path::PathBuf; use std::time::Instant; use anyhow::Context; use arc_cache::ArcCache; use cow_utils::CowUtils; use fst::IntoStreamer; use heed::EnvOpenOptions; use heed::types::*; use log::debug; use memmap::Mmap; use oxidized_mtbl::{Reader, Writer, Merger, Sorter, CompressionType}; use rayon::prelude::*; use roaring::RoaringBitmap; use slice_group_by::StrGroupBy; use structopt::StructOpt; use milli::{SmallVec32, Index, DocumentId, Position, Attribute}; const LMDB_MAX_KEY_LENGTH: usize = 512; const ONE_MILLION: usize = 1_000_000; const MAX_POSITION: usize = 1000; const MAX_ATTRIBUTES: usize = u32::max_value() as usize / MAX_POSITION; const HEADERS_KEY: &[u8] = b"\0headers"; const WORDS_FST_KEY: &[u8] = b"\x05words-fst"; const WORD_POSITIONS_BYTE: u8 = 1; const WORD_POSITION_DOCIDS_BYTE: u8 = 2; const WORD_ATTRIBUTE_DOCIDS_BYTE: u8 = 3; const DOCUMENT_BYTE: u8 = 4; #[cfg(target_os = "linux")] #[global_allocator] static ALLOC: jemallocator::Jemalloc = jemallocator::Jemalloc; pub fn simple_alphanumeric_tokens(string: &str) -> impl Iterator { let is_alphanumeric = |s: &&str| s.chars().next().map_or(false, char::is_alphanumeric); string.linear_group_by_key(|c| c.is_alphanumeric()).filter(is_alphanumeric) } #[derive(Debug, StructOpt)] #[structopt(name = "milli-indexer", about = "The indexer binary of the milli project.")] struct Opt { /// The database path where the database is located. /// It is created if it doesn't already exist. #[structopt(long = "db", parse(from_os_str))] database: PathBuf, /// Number of parallel jobs, defaults to # of CPUs. #[structopt(short, long)] jobs: Option, /// MTBL max number of chunks in bytes. #[structopt(long)] max_nb_chunks: Option, /// MTBL max memory in bytes. #[structopt(long)] max_memory: Option, /// Size of the ARC cache when indexing. #[structopt(long)] arc_cache_size: Option, /// Verbose mode (-v, -vv, -vvv, etc.) #[structopt(short, long, parse(from_occurrences))] verbose: usize, /// CSV file to index, if unspecified the CSV is read from standard input. csv_file: Option, } fn lmdb_key_valid_size(key: &[u8]) -> bool { !key.is_empty() && key.len() <= LMDB_MAX_KEY_LENGTH } type MergeFn = fn(&[u8], &[Vec]) -> Result, ()>; struct Store { word_positions: ArcCache, RoaringBitmap>, word_position_docids: ArcCache<(SmallVec32, Position), RoaringBitmap>, word_attribute_docids: ArcCache<(SmallVec32, Attribute), RoaringBitmap>, sorter: Sorter, } impl Store { fn new(arc_cache_size: Option, max_nb_chunks: Option, max_memory: Option) -> Store { let mut builder = Sorter::builder(merge as MergeFn); builder.chunk_compression_type(CompressionType::Snappy); if let Some(nb_chunks) = max_nb_chunks { builder.max_nb_chunks(nb_chunks); } if let Some(memory) = max_memory { builder.max_memory(memory); } let arc_cache_size = arc_cache_size.unwrap_or(65_535); Store { word_positions: ArcCache::new(arc_cache_size), word_position_docids: ArcCache::new(arc_cache_size), word_attribute_docids: ArcCache::new(arc_cache_size), sorter: builder.build(), } } // Save the positions where this word has been seen. pub fn insert_word_position(&mut self, word: &str, position: Position) -> anyhow::Result<()> { let word = SmallVec32::from(word.as_bytes()); let position = RoaringBitmap::from_iter(Some(position)); let (_, lrus) = self.word_positions.insert(word, position, |old, new| old.union_with(&new)); Self::write_word_positions(&mut self.sorter, lrus) } // Save the documents ids under the position and word we have seen it. pub fn insert_word_position_docid(&mut self, word: &str, position: Position, id: DocumentId) -> anyhow::Result<()> { let word_vec = SmallVec32::from(word.as_bytes()); let ids = RoaringBitmap::from_iter(Some(id)); let (_, lrus) = self.word_position_docids.insert((word_vec, position), ids, |old, new| old.union_with(&new)); Self::write_word_position_docids(&mut self.sorter, lrus)?; self.insert_word_attribute_docid(word, position / MAX_POSITION as u32, id) } // Save the documents ids under the attribute and word we have seen it. fn insert_word_attribute_docid(&mut self, word: &str, attribute: Attribute, id: DocumentId) -> anyhow::Result<()> { let word = SmallVec32::from(word.as_bytes()); let ids = RoaringBitmap::from_iter(Some(id)); let (_, lrus) = self.word_attribute_docids.insert((word, attribute), ids, |old, new| old.union_with(&new)); Self::write_word_attribute_docids(&mut self.sorter, lrus) } pub fn write_headers(&mut self, headers: &[u8]) -> anyhow::Result<()> { Ok(self.sorter.insert(HEADERS_KEY, headers)?) } pub fn write_document(&mut self, id: DocumentId, content: &[u8]) -> anyhow::Result<()> { let id = id.to_be_bytes(); let mut key = Vec::with_capacity(1 + id.len()); key.push(DOCUMENT_BYTE); key.extend_from_slice(&id); Ok(self.sorter.insert(&key, content)?) } fn write_word_positions(sorter: &mut Sorter, iter: I) -> anyhow::Result<()> where I: IntoIterator, RoaringBitmap)> { // postings ids keys are all prefixed let mut key = vec![WORD_POSITIONS_BYTE]; let mut buffer = Vec::new(); for (word, positions) in iter { key.truncate(1); key.extend_from_slice(&word); // We serialize the positions into a buffer buffer.clear(); positions.serialize_into(&mut buffer)?; // that we write under the generated key into MTBL if lmdb_key_valid_size(&key) { sorter.insert(&key, &buffer)?; } } Ok(()) } fn write_word_position_docids(sorter: &mut Sorter, iter: I) -> anyhow::Result<()> where I: IntoIterator, Position), RoaringBitmap)> { // postings positions ids keys are all prefixed let mut key = vec![WORD_POSITION_DOCIDS_BYTE]; let mut buffer = Vec::new(); for ((word, pos), ids) in iter { key.truncate(1); key.extend_from_slice(&word); // we postfix the word by the positions it appears in key.extend_from_slice(&pos.to_be_bytes()); // We serialize the document ids into a buffer buffer.clear(); ids.serialize_into(&mut buffer)?; // that we write under the generated key into MTBL if lmdb_key_valid_size(&key) { sorter.insert(&key, &buffer)?; } } Ok(()) } fn write_word_attribute_docids(sorter: &mut Sorter, iter: I) -> anyhow::Result<()> where I: IntoIterator, Attribute), RoaringBitmap)> { // postings attributes keys are all prefixed let mut key = vec![WORD_ATTRIBUTE_DOCIDS_BYTE]; let mut buffer = Vec::new(); for ((word, attr), ids) in iter { key.truncate(1); key.extend_from_slice(&word); // we postfix the word by the positions it appears in key.extend_from_slice(&attr.to_be_bytes()); // We serialize the document ids into a buffer buffer.clear(); ids.serialize_into(&mut buffer)?; // that we write under the generated key into MTBL if lmdb_key_valid_size(&key) { sorter.insert(&key, &buffer)?; } } Ok(()) } pub fn finish(mut self) -> anyhow::Result> { Self::write_word_positions(&mut self.sorter, self.word_positions)?; Self::write_word_position_docids(&mut self.sorter, self.word_position_docids)?; Self::write_word_attribute_docids(&mut self.sorter, self.word_attribute_docids)?; let mut wtr = tempfile::tempfile().map(Writer::new)?; let mut builder = fst::SetBuilder::memory(); let mut iter = self.sorter.into_iter()?; while let Some(result) = iter.next() { let (key, val) = result?; if let Some((&1, word)) = key.split_first() { // This is a lexicographically ordered word position // we use the key to construct the words fst. builder.insert(word)?; } wtr.insert(key, val)?; } let fst = builder.into_set(); wtr.insert(WORDS_FST_KEY, fst.as_fst().as_bytes())?; let file = wtr.into_inner()?; let mmap = unsafe { Mmap::map(&file)? }; let reader = Reader::new(mmap)?; Ok(reader) } } fn merge(key: &[u8], values: &[Vec]) -> Result, ()> { match key { WORDS_FST_KEY => { let fsts: Vec<_> = values.iter().map(|v| fst::Set::new(v).unwrap()).collect(); // Union of the two FSTs let mut op = fst::set::OpBuilder::new(); fsts.iter().for_each(|fst| op.push(fst.into_stream())); let op = op.r#union(); let mut build = fst::SetBuilder::memory(); build.extend_stream(op.into_stream()).unwrap(); Ok(build.into_inner().unwrap()) }, HEADERS_KEY => { assert!(values.windows(2).all(|vs| vs[0] == vs[1])); Ok(values[0].to_vec()) }, key => match key[0] { WORD_POSITIONS_BYTE | WORD_POSITION_DOCIDS_BYTE | WORD_ATTRIBUTE_DOCIDS_BYTE => { let mut first = RoaringBitmap::deserialize_from(values[0].as_slice()).unwrap(); for value in &values[1..] { let bitmap = RoaringBitmap::deserialize_from(value.as_slice()).unwrap(); first.union_with(&bitmap); } let mut vec = Vec::new(); first.serialize_into(&mut vec).unwrap(); Ok(vec) }, DOCUMENT_BYTE => { assert!(values.windows(2).all(|vs| vs[0] == vs[1])); Ok(values[0].to_vec()) }, otherwise => panic!("wut {:?}", otherwise), } } } // TODO merge with the previous values // TODO store the documents in a compressed MTBL fn lmdb_writer(wtxn: &mut heed::RwTxn, index: &Index, key: &[u8], val: &[u8]) -> anyhow::Result<()> { if key == WORDS_FST_KEY { // Write the words fst index.main.put::<_, Str, ByteSlice>(wtxn, "words-fst", val)?; } else if key == HEADERS_KEY { // Write the headers index.main.put::<_, Str, ByteSlice>(wtxn, "headers", val)?; } else if key.starts_with(&[WORD_POSITIONS_BYTE]) { // Write the postings lists index.word_positions.as_polymorph() .put::<_, ByteSlice, ByteSlice>(wtxn, &key[1..], val)?; } else if key.starts_with(&[WORD_POSITION_DOCIDS_BYTE]) { // Write the postings lists index.word_position_docids.as_polymorph() .put::<_, ByteSlice, ByteSlice>(wtxn, &key[1..], val)?; } else if key.starts_with(&[WORD_ATTRIBUTE_DOCIDS_BYTE]) { // Write the attribute postings lists index.word_attribute_docids.as_polymorph() .put::<_, ByteSlice, ByteSlice>(wtxn, &key[1..], val)?; } else if key.starts_with(&[DOCUMENT_BYTE]) { // Write the documents index.documents.as_polymorph() .put::<_, ByteSlice, ByteSlice>(wtxn, &key[1..], val)?; } Ok(()) } fn merge_into_lmdb(sources: Vec>, mut f: F) -> anyhow::Result<()> where F: FnMut(&[u8], &[u8]) -> anyhow::Result<()> { debug!("Merging {} MTBL stores...", sources.len()); let before = Instant::now(); let mut builder = Merger::builder(merge); builder.extend(sources); let merger = builder.build(); let mut iter = merger.into_merge_iter()?; while let Some(result) = iter.next() { let (k, v) = result?; (f)(&k, &v)?; } debug!("MTBL stores merged in {:.02?}!", before.elapsed()); Ok(()) } fn index_csv( mut rdr: csv::Reader, thread_index: usize, num_threads: usize, arc_cache_size: Option, max_nb_chunks: Option, max_memory: Option, ) -> anyhow::Result> { debug!("{:?}: Indexing into an Indexed...", thread_index); let mut store = Store::new(arc_cache_size, max_nb_chunks, max_memory); // Write the headers into a Vec of bytes and then into the store. let headers = rdr.headers()?; let mut writer = csv::WriterBuilder::new().has_headers(false).from_writer(Vec::new()); writer.write_byte_record(headers.as_byte_record())?; let headers = writer.into_inner()?; store.write_headers(&headers)?; let mut before = Instant::now(); let mut document_id: usize = 0; let mut document = csv::StringRecord::new(); while rdr.read_record(&mut document)? { document_id = document_id + 1; // We skip documents that must not be indexed by this thread if document_id % num_threads != thread_index { continue } let document_id = DocumentId::try_from(document_id).context("generated id is too big")?; if document_id % (ONE_MILLION as u32) == 0 { debug!("We have seen {}m documents so far ({:.02?}).", document_id / ONE_MILLION as u32, before.elapsed()); before = Instant::now(); } for (attr, content) in document.iter().enumerate().take(MAX_ATTRIBUTES) { for (pos, word) in simple_alphanumeric_tokens(&content).enumerate().take(MAX_POSITION) { let word = word.cow_to_lowercase(); let position = (attr * MAX_POSITION + pos) as u32; store.insert_word_position(&word, position)?; store.insert_word_position_docid(&word, position, document_id)?; } } // We write the document in the database. let mut writer = csv::WriterBuilder::new().has_headers(false).from_writer(Vec::new()); writer.write_byte_record(document.as_byte_record())?; let document = writer.into_inner()?; store.write_document(document_id, &document)?; } let reader = store.finish()?; debug!("{:?}: Store created!", thread_index); Ok(reader) } fn main() -> anyhow::Result<()> { let opt = Opt::from_args(); stderrlog::new() .verbosity(opt.verbose) .show_level(false) .timestamp(stderrlog::Timestamp::Off) .init()?; if let Some(jobs) = opt.jobs { rayon::ThreadPoolBuilder::new().num_threads(jobs).build_global()?; } std::fs::create_dir_all(&opt.database)?; let env = EnvOpenOptions::new() .map_size(100 * 1024 * 1024 * 1024) // 100 GB .max_readers(10) .max_dbs(10) .open(opt.database)?; let index = Index::new(&env)?; let num_threads = rayon::current_num_threads(); let arc_cache_size = opt.arc_cache_size; let max_nb_chunks = opt.max_nb_chunks; let max_memory = opt.max_memory; // We duplicate the file # jobs times. let file = opt.csv_file.unwrap(); let csv_readers = (0..num_threads) .map(|_| csv::Reader::from_path(&file)) .collect::, _>>()?; let stores = csv_readers .into_par_iter() .enumerate() .map(|(i, rdr)| index_csv(rdr, i, num_threads, arc_cache_size, max_nb_chunks, max_memory)) .collect::>()?; debug!("We are writing into LMDB..."); let mut wtxn = env.write_txn()?; merge_into_lmdb(stores, |k, v| lmdb_writer(&mut wtxn, &index, k, v))?; let count = index.documents.len(&wtxn)?; wtxn.commit()?; debug!("Wrote {} documents into LMDB", count); Ok(()) }