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Make the word prefix integer multi-threaded
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parent
700757c01f
commit
7864530589
@ -4,7 +4,7 @@ use std::io::{BufReader, BufWriter, Read, Seek, Write};
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use hashbrown::HashMap;
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use hashbrown::HashMap;
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use heed::types::Bytes;
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use heed::types::Bytes;
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use heed::{BytesDecode, Database, RoTxn, RwTxn};
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use heed::{BytesDecode, Database, Error, RoTxn, RwTxn};
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use rayon::iter::{IntoParallelIterator, ParallelIterator as _};
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use rayon::iter::{IntoParallelIterator, ParallelIterator as _};
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use roaring::MultiOps;
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use roaring::MultiOps;
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use tempfile::tempfile;
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use tempfile::tempfile;
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@ -171,35 +171,54 @@ impl WordPrefixIntegerDocids {
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prefixes: &HashSet<Prefix>,
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prefixes: &HashSet<Prefix>,
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) -> Result<()> {
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) -> Result<()> {
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// We fetch the docids associated to the newly added word prefix fst only.
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// We fetch the docids associated to the newly added word prefix fst only.
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// We use a HashMap to store the docids associated to each position, may be RAM consuming.
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// And collect the CboRoaringBitmaps pointers in an HashMap.
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let mut integer_docids = HashMap::new();
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let frozen = FrozenPrefixIntegerBitmaps::from_prefixes(self.database, wtxn, prefixes)?;
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// We access this HashMap in parallel to compute the *union* of all
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// of them and *serialize* them into files. There is one file by CPU.
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let local_entries = ThreadLocal::with_capacity(rayon::current_num_threads());
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prefixes.into_par_iter().map(AsRef::as_ref).try_for_each(|prefix| {
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let refcell = local_entries.get_or_try(|| {
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tempfile().map(BufWriter::new).map(|f| RefCell::new((Vec::new(), f, Vec::new())))
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})?;
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let mut refmut = refcell.borrow_mut_or_yield();
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let (ref mut index, ref mut file, ref mut buffer) = *refmut;
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for (&pos, bitmaps_bytes) in frozen.bitmaps(prefix).unwrap() {
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let output = bitmaps_bytes
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.iter()
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.map(|bytes| CboRoaringBitmapCodec::deserialize_from(bytes))
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.union()?;
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buffer.clear();
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CboRoaringBitmapCodec::serialize_into(&output, buffer);
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index.push(PrefixIntegerEntry { prefix, pos, serialized_length: buffer.len() });
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file.write_all(buffer)?;
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}
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Result::Ok(())
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})?;
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drop(frozen);
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// We iterate over all the collected and serialized bitmaps through
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// the files and entries to eventually put them in the final database.
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let mut key_buffer = Vec::new();
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let mut key_buffer = Vec::new();
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for prefix in prefixes {
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for refcell in local_entries {
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let prefix = prefix.as_bytes();
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let (index, file, mut buffer) = refcell.into_inner();
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for result in self.database.prefix_iter(wtxn, prefix)? {
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let mut file = file.into_inner().map_err(|e| e.into_error())?;
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let (key, data) = result?;
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file.rewind()?;
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let (_word, pos) =
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let mut file = BufReader::new(file);
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StrBEU16Codec::bytes_decode(key).map_err(heed::Error::Decoding)?;
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for PrefixIntegerEntry { prefix, pos, serialized_length } in index {
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buffer.resize(serialized_length, 0);
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file.read_exact(&mut buffer)?;
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match integer_docids.get_mut(&pos) {
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Some(docids) => {
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*docids |= &data;
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}
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None => {
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integer_docids.insert(pos, data);
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}
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}
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}
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for (pos, docids) in integer_docids.iter_mut() {
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if !docids.is_empty() {
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key_buffer.clear();
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key_buffer.clear();
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key_buffer.extend_from_slice(prefix);
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key_buffer.extend_from_slice(prefix.as_bytes());
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key_buffer.push(0);
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key_buffer.push(0);
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key_buffer.extend_from_slice(&pos.to_be_bytes());
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key_buffer.extend_from_slice(&pos.to_be_bytes());
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self.prefix_database.put(wtxn, &key_buffer, docids)?;
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self.prefix_database.remap_data_type::<Bytes>().put(wtxn, &key_buffer, &buffer)?;
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}
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docids.clear();
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}
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}
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}
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}
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@ -207,6 +226,48 @@ impl WordPrefixIntegerDocids {
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}
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}
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}
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}
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/// Represents a prefix and the lenght the bitmap takes on disk.
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struct PrefixIntegerEntry<'a> {
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prefix: &'a str,
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pos: u16,
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serialized_length: usize,
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}
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/// TODO doc
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struct FrozenPrefixIntegerBitmaps<'a, 'rtxn> {
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prefixes_bitmaps: HashMap<&'a str, HashMap<u16, Vec<&'rtxn [u8]>>>,
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}
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impl<'a, 'rtxn> FrozenPrefixIntegerBitmaps<'a, 'rtxn> {
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#[tracing::instrument(level = "trace", skip_all, target = "indexing::prefix")]
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pub fn from_prefixes(
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database: Database<Bytes, CboRoaringBitmapCodec>,
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rtxn: &'rtxn RoTxn,
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prefixes: &'a HashSet<Prefix>,
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) -> heed::Result<Self> {
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let database = database.remap_data_type::<Bytes>();
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let mut prefixes_bitmaps = HashMap::new();
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for prefix in prefixes {
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let mut positions = HashMap::new();
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for result in database.prefix_iter(rtxn, prefix.as_bytes())? {
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let (key, bytes) = result?;
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let (_word, pos) = StrBEU16Codec::bytes_decode(key).map_err(Error::Decoding)?;
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positions.entry(pos).or_insert_with(Vec::new).push(bytes);
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}
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assert!(prefixes_bitmaps.insert(prefix.as_str(), positions).is_none());
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}
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Ok(Self { prefixes_bitmaps })
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}
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pub fn bitmaps(&self, key: &'a str) -> Option<&HashMap<u16, Vec<&'rtxn [u8]>>> {
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self.prefixes_bitmaps.get(&key)
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}
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}
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unsafe impl<'a, 'rtxn> Sync for FrozenPrefixIntegerBitmaps<'a, 'rtxn> {}
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#[tracing::instrument(level = "trace", skip_all, target = "indexing::prefix")]
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#[tracing::instrument(level = "trace", skip_all, target = "indexing::prefix")]
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fn delete_prefixes(
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fn delete_prefixes(
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wtxn: &mut RwTxn,
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wtxn: &mut RwTxn,
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