Send large payload through crossbeam

This commit is contained in:
Clément Renault 2024-11-27 18:06:43 +01:00
parent 5c488e20cc
commit 58eab9a018
No known key found for this signature in database
GPG Key ID: F250A4C4E3AE5F5F
2 changed files with 266 additions and 36 deletions

View File

@ -1,4 +1,5 @@
use std::cell::RefCell; use std::cell::RefCell;
use std::io::{self, BufWriter};
use std::marker::PhantomData; use std::marker::PhantomData;
use std::mem; use std::mem;
use std::num::NonZeroU16; use std::num::NonZeroU16;
@ -9,7 +10,7 @@ use bytemuck::{checked, CheckedBitPattern, NoUninit};
use crossbeam_channel::SendError; use crossbeam_channel::SendError;
use heed::types::Bytes; use heed::types::Bytes;
use heed::BytesDecode; use heed::BytesDecode;
use memmap2::Mmap; use memmap2::{Mmap, MmapMut};
use roaring::RoaringBitmap; use roaring::RoaringBitmap;
use super::extract::FacetKind; use super::extract::FacetKind;
@ -98,20 +99,63 @@ pub struct WriterBbqueueReceiver<'a> {
pub enum ReceiverAction { pub enum ReceiverAction {
/// Wake up, you have frames to read for the BBQueue buffers. /// Wake up, you have frames to read for the BBQueue buffers.
WakeUp, WakeUp,
/// An entry that cannot fit in the BBQueue buffers has been LargeEntry(LargeEntry),
/// written to disk, memory-mapped and must be written in the LargeVector(LargeVector),
/// database. LargeVectors(LargeVectors),
LargeEntry { }
/// The database where the entry must be written.
database: Database, /// An entry that cannot fit in the BBQueue buffers has been
/// The key of the entry that must be written in the database. /// written to disk, memory-mapped and must be written in the
key: Box<[u8]>, /// database.
/// The large value that must be written. #[derive(Debug)]
/// pub struct LargeEntry {
/// Note: We can probably use a `File` here and /// The database where the entry must be written.
/// use `Database::put_reserved` instead of memory-mapping. pub database: Database,
value: Mmap, /// The key of the entry that must be written in the database.
}, pub key: Box<[u8]>,
/// The large value that must be written.
///
/// Note: We can probably use a `File` here and
/// use `Database::put_reserved` instead of memory-mapping.
pub value: Mmap,
}
/// When an embedding is larger than the available
/// BBQueue space it arrives here.
#[derive(Debug)]
pub struct LargeVector {
/// The document id associated to the large embedding.
pub docid: DocumentId,
/// The embedder id in which to insert the large embedding.
pub embedder_id: u8,
/// The large embedding that must be written.
pub embedding: Mmap,
}
impl LargeVector {
pub fn read_embedding(&self) -> &[f32] {
bytemuck::cast_slice(&self.embedding)
}
}
/// When embeddings are larger than the available
/// BBQueue space it arrives here.
#[derive(Debug)]
pub struct LargeVectors {
/// The document id associated to the large embedding.
pub docid: DocumentId,
/// The embedder id in which to insert the large embedding.
pub embedder_id: u8,
/// The dimensions of the embeddings in this payload.
pub dimensions: u16,
/// The large embedding that must be written.
pub embeddings: Mmap,
}
impl LargeVectors {
pub fn read_embeddings(&self) -> impl Iterator<Item = &[f32]> {
self.embeddings.chunks_exact(self.dimensions as usize).map(bytemuck::cast_slice)
}
} }
impl<'a> WriterBbqueueReceiver<'a> { impl<'a> WriterBbqueueReceiver<'a> {
@ -209,12 +253,55 @@ impl ArroySetVector {
} }
} }
#[derive(Debug, Clone, Copy, NoUninit, CheckedBitPattern)]
#[repr(C)]
/// The embeddings are in the remaining space and represents
/// non-aligned [f32] each with dimensions f32s.
pub struct ArroySetVectors {
pub docid: DocumentId,
pub dimensions: u16,
pub embedder_id: u8,
_padding: u8,
}
impl ArroySetVectors {
fn remaining_bytes<'a>(frame: &'a FrameGrantR<'_>) -> &'a [u8] {
let skip = EntryHeader::variant_size() + mem::size_of::<Self>();
&frame[skip..]
}
// /// The number of embeddings in this payload.
// pub fn embedding_count(&self, frame: &FrameGrantR<'_>) -> usize {
// let bytes = Self::remaining_bytes(frame);
// bytes.len().checked_div(self.dimensions as usize).unwrap()
// }
/// Read the embedding at `index` or `None` if out of bounds.
pub fn read_embedding_into_vec<'v>(
&self,
frame: &FrameGrantR<'_>,
index: usize,
vec: &'v mut Vec<f32>,
) -> Option<&'v [f32]> {
vec.clear();
let bytes = Self::remaining_bytes(frame);
let embedding_size = self.dimensions as usize * mem::size_of::<f32>();
let embedding_bytes = bytes.chunks_exact(embedding_size).nth(index)?;
embedding_bytes.chunks_exact(mem::size_of::<f32>()).for_each(|bytes| {
let f = bytes.try_into().map(f32::from_ne_bytes).unwrap();
vec.push(f);
});
Some(&vec[..])
}
}
#[derive(Debug, Clone, Copy)] #[derive(Debug, Clone, Copy)]
#[repr(u8)] #[repr(u8)]
pub enum EntryHeader { pub enum EntryHeader {
DbOperation(DbOperation), DbOperation(DbOperation),
ArroyDeleteVector(ArroyDeleteVector), ArroyDeleteVector(ArroyDeleteVector),
ArroySetVector(ArroySetVector), ArroySetVector(ArroySetVector),
ArroySetVectors(ArroySetVectors),
} }
impl EntryHeader { impl EntryHeader {
@ -227,6 +314,7 @@ impl EntryHeader {
EntryHeader::DbOperation(_) => 0, EntryHeader::DbOperation(_) => 0,
EntryHeader::ArroyDeleteVector(_) => 1, EntryHeader::ArroyDeleteVector(_) => 1,
EntryHeader::ArroySetVector(_) => 2, EntryHeader::ArroySetVector(_) => 2,
EntryHeader::ArroySetVectors(_) => 3,
} }
} }
@ -245,11 +333,15 @@ impl EntryHeader {
Self::variant_size() + mem::size_of::<ArroyDeleteVector>() Self::variant_size() + mem::size_of::<ArroyDeleteVector>()
} }
/// The `embedding_length` corresponds to the number of `f32` in the embedding. /// The `dimensions` corresponds to the number of `f32` in the embedding.
fn total_set_vector_size(embedding_length: usize) -> usize { fn total_set_vector_size(dimensions: usize) -> usize {
Self::variant_size() Self::variant_size() + mem::size_of::<ArroySetVector>() + dimensions * mem::size_of::<f32>()
+ mem::size_of::<ArroySetVector>() }
+ embedding_length * mem::size_of::<f32>()
/// The `dimensions` corresponds to the number of `f32` in the embedding.
fn total_set_vectors_size(count: usize, dimensions: usize) -> usize {
let embedding_size = dimensions * mem::size_of::<f32>();
Self::variant_size() + mem::size_of::<ArroySetVectors>() + embedding_size * count
} }
fn header_size(&self) -> usize { fn header_size(&self) -> usize {
@ -257,6 +349,7 @@ impl EntryHeader {
EntryHeader::DbOperation(op) => mem::size_of_val(op), EntryHeader::DbOperation(op) => mem::size_of_val(op),
EntryHeader::ArroyDeleteVector(adv) => mem::size_of_val(adv), EntryHeader::ArroyDeleteVector(adv) => mem::size_of_val(adv),
EntryHeader::ArroySetVector(asv) => mem::size_of_val(asv), EntryHeader::ArroySetVector(asv) => mem::size_of_val(asv),
EntryHeader::ArroySetVectors(asvs) => mem::size_of_val(asvs),
}; };
Self::variant_size() + payload_size Self::variant_size() + payload_size
} }
@ -279,6 +372,11 @@ impl EntryHeader {
let header = checked::pod_read_unaligned(header_bytes); let header = checked::pod_read_unaligned(header_bytes);
EntryHeader::ArroySetVector(header) EntryHeader::ArroySetVector(header)
} }
3 => {
let header_bytes = &remaining[..mem::size_of::<ArroySetVectors>()];
let header = checked::pod_read_unaligned(header_bytes);
EntryHeader::ArroySetVectors(header)
}
id => panic!("invalid variant id: {id}"), id => panic!("invalid variant id: {id}"),
} }
} }
@ -289,6 +387,7 @@ impl EntryHeader {
EntryHeader::DbOperation(op) => bytemuck::bytes_of(op), EntryHeader::DbOperation(op) => bytemuck::bytes_of(op),
EntryHeader::ArroyDeleteVector(adv) => bytemuck::bytes_of(adv), EntryHeader::ArroyDeleteVector(adv) => bytemuck::bytes_of(adv),
EntryHeader::ArroySetVector(asv) => bytemuck::bytes_of(asv), EntryHeader::ArroySetVector(asv) => bytemuck::bytes_of(asv),
EntryHeader::ArroySetVectors(asvs) => bytemuck::bytes_of(asvs),
}; };
*first = self.variant_id(); *first = self.variant_id();
remaining.copy_from_slice(payload_bytes); remaining.copy_from_slice(payload_bytes);
@ -405,7 +504,7 @@ impl<'b> ExtractorBbqueueSender<'b> {
let payload_header = EntryHeader::ArroyDeleteVector(ArroyDeleteVector { docid }); let payload_header = EntryHeader::ArroyDeleteVector(ArroyDeleteVector { docid });
let total_length = EntryHeader::total_delete_vector_size(); let total_length = EntryHeader::total_delete_vector_size();
if total_length > capacity { if total_length > capacity {
unreachable!("entry larger that the BBQueue capacity"); panic!("The entry is larger ({total_length} bytes) than the BBQueue capacity ({capacity} bytes)");
} }
// Spin loop to have a frame the size we requested. // Spin loop to have a frame the size we requested.
@ -441,11 +540,21 @@ impl<'b> ExtractorBbqueueSender<'b> {
let refcell = self.producers.get().unwrap(); let refcell = self.producers.get().unwrap();
let mut producer = refcell.0.borrow_mut_or_yield(); let mut producer = refcell.0.borrow_mut_or_yield();
let payload_header = let arroy_set_vector = ArroySetVector { docid, embedder_id, _padding: [0; 3] };
EntryHeader::ArroySetVector(ArroySetVector { docid, embedder_id, _padding: [0; 3] }); let payload_header = EntryHeader::ArroySetVector(arroy_set_vector);
let total_length = EntryHeader::total_set_vector_size(embedding.len()); let total_length = EntryHeader::total_set_vector_size(embedding.len());
if total_length > capacity { if total_length > capacity {
unreachable!("entry larger that the BBQueue capacity"); let mut embedding_bytes = bytemuck::cast_slice(embedding);
let mut value_file = tempfile::tempfile().map(BufWriter::new)?;
io::copy(&mut embedding_bytes, &mut value_file)?;
let value_file = value_file.into_inner().map_err(|ie| ie.into_error())?;
value_file.sync_all()?;
let embedding = unsafe { Mmap::map(&value_file)? };
let large_vector = LargeVector { docid, embedder_id, embedding };
self.sender.send(ReceiverAction::LargeVector(large_vector)).unwrap();
return Ok(());
} }
// Spin loop to have a frame the size we requested. // Spin loop to have a frame the size we requested.
@ -457,7 +566,6 @@ impl<'b> ExtractorBbqueueSender<'b> {
} }
}; };
// payload_header.serialize_into(&mut grant);
let header_size = payload_header.header_size(); let header_size = payload_header.header_size();
let (header_bytes, remaining) = grant.split_at_mut(header_size); let (header_bytes, remaining) = grant.split_at_mut(header_size);
payload_header.serialize_into(header_bytes); payload_header.serialize_into(header_bytes);
@ -475,6 +583,83 @@ impl<'b> ExtractorBbqueueSender<'b> {
Ok(()) Ok(())
} }
fn set_vectors(
&self,
docid: u32,
embedder_id: u8,
embeddings: &[Vec<f32>],
) -> crate::Result<()> {
let capacity = self.capacity;
let refcell = self.producers.get().unwrap();
let mut producer = refcell.0.borrow_mut_or_yield();
let dimensions = match embeddings.first() {
Some(embedding) => embedding.len(),
None => return Ok(()),
};
let arroy_set_vector = ArroySetVectors {
docid,
dimensions: dimensions.try_into().unwrap(),
embedder_id,
_padding: 0,
};
let payload_header = EntryHeader::ArroySetVectors(arroy_set_vector);
let total_length = EntryHeader::total_set_vectors_size(embeddings.len(), dimensions);
if total_length > capacity {
let mut value_file = tempfile::tempfile().map(BufWriter::new)?;
for embedding in embeddings {
let mut embedding_bytes = bytemuck::cast_slice(embedding);
io::copy(&mut embedding_bytes, &mut value_file)?;
}
let value_file = value_file.into_inner().map_err(|ie| ie.into_error())?;
value_file.sync_all()?;
let embeddings = unsafe { Mmap::map(&value_file)? };
let large_vectors = LargeVectors {
docid,
embedder_id,
dimensions: dimensions.try_into().unwrap(),
embeddings,
};
self.sender.send(ReceiverAction::LargeVectors(large_vectors)).unwrap();
return Ok(());
}
// Spin loop to have a frame the size we requested.
let mut grant = loop {
match producer.grant(total_length) {
Ok(grant) => break grant,
Err(bbqueue::Error::InsufficientSize) => continue,
Err(e) => unreachable!("{e:?}"),
}
};
let header_size = payload_header.header_size();
let (header_bytes, remaining) = grant.split_at_mut(header_size);
payload_header.serialize_into(header_bytes);
let output_iter = remaining.chunks_exact_mut(dimensions * mem::size_of::<f32>());
for (embedding, output) in embeddings.iter().zip(output_iter) {
output.copy_from_slice(bytemuck::cast_slice(embedding));
}
// We could commit only the used memory.
grant.commit(total_length);
// We only send a wake up message when the channel is empty
// so that we don't fill the channel with too many WakeUps.
if self.sender.is_empty() {
self.sender.send(ReceiverAction::WakeUp).unwrap();
}
Ok(())
}
fn write_key_value(&self, database: Database, key: &[u8], value: &[u8]) -> crate::Result<()> { fn write_key_value(&self, database: Database, key: &[u8], value: &[u8]) -> crate::Result<()> {
let key_length = NonZeroU16::new(key.len().try_into().unwrap()).unwrap(); let key_length = NonZeroU16::new(key.len().try_into().unwrap()).unwrap();
self.write_key_value_with(database, key_length, value.len(), |key_buffer, value_buffer| { self.write_key_value_with(database, key_length, value.len(), |key_buffer, value_buffer| {
@ -502,7 +687,22 @@ impl<'b> ExtractorBbqueueSender<'b> {
let payload_header = EntryHeader::DbOperation(operation); let payload_header = EntryHeader::DbOperation(operation);
let total_length = EntryHeader::total_key_value_size(key_length, value_length); let total_length = EntryHeader::total_key_value_size(key_length, value_length);
if total_length > capacity { if total_length > capacity {
unreachable!("entry larger that the BBQueue capacity"); let mut key_buffer = vec![0; key_length.get() as usize].into_boxed_slice();
let value_file = tempfile::tempfile()?;
value_file.set_len(value_length.try_into().unwrap())?;
let mut mmap_mut = unsafe { MmapMut::map_mut(&value_file)? };
key_value_writer(&mut key_buffer, &mut mmap_mut)?;
self.sender
.send(ReceiverAction::LargeEntry(LargeEntry {
database,
key: key_buffer,
value: mmap_mut.make_read_only()?,
}))
.unwrap();
return Ok(());
} }
// Spin loop to have a frame the size we requested. // Spin loop to have a frame the size we requested.
@ -559,7 +759,7 @@ impl<'b> ExtractorBbqueueSender<'b> {
let payload_header = EntryHeader::DbOperation(operation); let payload_header = EntryHeader::DbOperation(operation);
let total_length = EntryHeader::total_key_size(key_length); let total_length = EntryHeader::total_key_size(key_length);
if total_length > capacity { if total_length > capacity {
unreachable!("entry larger that the BBQueue capacity"); panic!("The entry is larger ({total_length} bytes) than the BBQueue capacity ({capacity} bytes)");
} }
// Spin loop to have a frame the size we requested. // Spin loop to have a frame the size we requested.
@ -763,10 +963,7 @@ impl EmbeddingSender<'_, '_> {
embedder_id: u8, embedder_id: u8,
embeddings: Vec<Embedding>, embeddings: Vec<Embedding>,
) -> crate::Result<()> { ) -> crate::Result<()> {
for embedding in embeddings { self.0.set_vectors(docid, embedder_id, &embeddings[..])
self.set_vector(docid, embedder_id, embedding)?;
}
Ok(())
} }
pub fn set_vector( pub fn set_vector(
@ -786,11 +983,11 @@ impl GeoSender<'_, '_> {
pub fn set_rtree(&self, value: Mmap) -> StdResult<(), SendError<()>> { pub fn set_rtree(&self, value: Mmap) -> StdResult<(), SendError<()>> {
self.0 self.0
.sender .sender
.send(ReceiverAction::LargeEntry { .send(ReceiverAction::LargeEntry(LargeEntry {
database: Database::Main, database: Database::Main,
key: GEO_RTREE_KEY.to_string().into_bytes().into_boxed_slice(), key: GEO_RTREE_KEY.to_string().into_bytes().into_boxed_slice(),
value, value,
}) }))
.map_err(|_| SendError(())) .map_err(|_| SendError(()))
} }

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@ -16,6 +16,7 @@ use rand::SeedableRng as _;
use raw_collections::RawMap; use raw_collections::RawMap;
use time::OffsetDateTime; use time::OffsetDateTime;
pub use update_by_function::UpdateByFunction; pub use update_by_function::UpdateByFunction;
use {LargeEntry, LargeVector};
use super::channel::*; use super::channel::*;
use super::extract::*; use super::extract::*;
@ -40,7 +41,7 @@ use crate::update::new::words_prefix_docids::compute_exact_word_prefix_docids;
use crate::update::new::{merge_and_send_docids, merge_and_send_facet_docids, FacetDatabases}; use crate::update::new::{merge_and_send_docids, merge_and_send_facet_docids, FacetDatabases};
use crate::update::settings::InnerIndexSettings; use crate::update::settings::InnerIndexSettings;
use crate::update::{FacetsUpdateBulk, GrenadParameters}; use crate::update::{FacetsUpdateBulk, GrenadParameters};
use crate::vector::{ArroyWrapper, EmbeddingConfigs}; use crate::vector::{ArroyWrapper, EmbeddingConfigs, Embeddings};
use crate::{ use crate::{
Error, FieldsIdsMap, GlobalFieldsIdsMap, Index, InternalError, Result, ThreadPoolNoAbort, Error, FieldsIdsMap, GlobalFieldsIdsMap, Index, InternalError, Result, ThreadPoolNoAbort,
ThreadPoolNoAbortBuilder, UserError, ThreadPoolNoAbortBuilder, UserError,
@ -132,7 +133,8 @@ where
{ {
let span = tracing::trace_span!(target: "indexing::documents::extract", parent: &indexer_span, "documents"); let span = tracing::trace_span!(target: "indexing::documents::extract", parent: &indexer_span, "documents");
let _entered = span.enter(); let _entered = span.enter();
extract(document_changes, extract(
document_changes,
&document_extractor, &document_extractor,
indexing_context, indexing_context,
&mut extractor_allocs, &mut extractor_allocs,
@ -416,7 +418,7 @@ where
match action { match action {
ReceiverAction::WakeUp => (), ReceiverAction::WakeUp => (),
ReceiverAction::LargeEntry { database, key, value } => { ReceiverAction::LargeEntry(LargeEntry { database, key, value }) => {
let database_name = database.database_name(); let database_name = database.database_name();
let database = database.database(index); let database = database.database(index);
if let Err(error) = database.put(wtxn, &key, &value) { if let Err(error) = database.put(wtxn, &key, &value) {
@ -428,6 +430,24 @@ where
})); }));
} }
} }
ReceiverAction::LargeVector(large_vector) => {
let embedding = large_vector.read_embedding();
let LargeVector { docid, embedder_id, .. } = large_vector;
let (_, _, writer, dimensions) =
arroy_writers.get(&embedder_id).expect("requested a missing embedder");
writer.del_items(wtxn, *dimensions, docid)?;
writer.add_item(wtxn, docid, embedding)?;
}
ReceiverAction::LargeVectors(large_vectors) => {
let LargeVectors { docid, embedder_id, .. } = large_vectors;
let (_, _, writer, dimensions) =
arroy_writers.get(&embedder_id).expect("requested a missing embedder");
writer.del_items(wtxn, *dimensions, docid)?;
let mut embeddings = Embeddings::new(*dimensions);
for embedding in large_vectors.read_embeddings() {
embeddings.push(embedding.to_vec()).unwrap();
}
}
} }
// Every time the is a message in the channel we search // Every time the is a message in the channel we search
@ -582,6 +602,19 @@ fn write_from_bbqueue(
writer.del_items(wtxn, *dimensions, docid)?; writer.del_items(wtxn, *dimensions, docid)?;
writer.add_item(wtxn, docid, embedding)?; writer.add_item(wtxn, docid, embedding)?;
} }
EntryHeader::ArroySetVectors(asvs) => {
let ArroySetVectors { docid, embedder_id, .. } = asvs;
let frame = frame_with_header.frame();
let (_, _, writer, dimensions) =
arroy_writers.get(&embedder_id).expect("requested a missing embedder");
writer.del_items(wtxn, *dimensions, docid)?;
for index in 0.. {
match asvs.read_embedding_into_vec(frame, index, aligned_embedding) {
Some(embedding) => writer.add_item(wtxn, docid, embedding)?,
None => break,
}
}
}
} }
} }