Merge pull request #98 from Kerollmops/updates-with-transactions

Change updates to be handled using the RocksDB WriteBatch feature
This commit is contained in:
Clément Renault 2019-02-06 16:13:47 +01:00 committed by GitHub
commit 4398b88a3a
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13 changed files with 291 additions and 842 deletions

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@ -11,8 +11,8 @@ matrix:
include: include:
# Test crates on their minimum Rust versions. # Test crates on their minimum Rust versions.
- rust: 1.31.0 - rust: 1.32.0
name: "meilidb on 1.31.0" name: "meilidb on 1.32.0"
script: ./ci/meilidb.sh script: ./ci/meilidb.sh
# Test crates on nightly Rust. # Test crates on nightly Rust.

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@ -49,11 +49,6 @@ rand_xorshift = "0.1"
structopt = "0.2" structopt = "0.2"
tempfile = "3.0" tempfile = "3.0"
termcolor = "1.0" termcolor = "1.0"
warp = "0.1"
[dev-dependencies.chashmap]
git = "https://gitlab.redox-os.org/redox-os/tfs.git"
rev = "b3e7cae1"
[profile.release] [profile.release]
debug = true debug = true

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@ -11,7 +11,7 @@ use std::fs::File;
use serde_derive::{Serialize, Deserialize}; use serde_derive::{Serialize, Deserialize};
use structopt::StructOpt; use structopt::StructOpt;
use meilidb::database::{Database, Schema, UpdateBuilder}; use meilidb::database::{Database, Schema};
use meilidb::tokenizer::DefaultBuilder; use meilidb::tokenizer::DefaultBuilder;
#[derive(Debug, StructOpt)] #[derive(Debug, StructOpt)]
@ -61,8 +61,7 @@ fn index(
while !end_of_file { while !end_of_file {
let tokenizer_builder = DefaultBuilder::new(); let tokenizer_builder = DefaultBuilder::new();
let update_path = tempfile::NamedTempFile::new()?; let mut update = database.update()?;
let mut update = UpdateBuilder::new(update_path.path().to_path_buf(), schema.clone());
loop { loop {
end_of_file = !rdr.read_record(&mut raw_record)?; end_of_file = !rdr.read_record(&mut raw_record)?;
@ -88,10 +87,8 @@ fn index(
println!(); println!();
println!("building update..."); println!("committing update...");
let update = update.build()?; update.commit()?;
println!("ingesting update...");
database.ingest_update_file(update)?;
} }
Ok(database) Ok(database)

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@ -1,431 +0,0 @@
#[global_allocator]
static ALLOC: jemallocator::Jemalloc = jemallocator::Jemalloc;
use std::collections::{HashMap, HashSet};
use std::error::Error;
use std::ffi::OsStr;
use std::fmt;
use std::fs::{self, File};
use std::io::{self, BufRead, BufReader};
use std::net::SocketAddr;
use std::path::{PathBuf, Path};
use std::sync::Arc;
use std::time::SystemTime;
use chashmap::{CHashMap, ReadGuard};
use elapsed::measure_time;
use meilidb::database::{Database, UpdateBuilder};
use meilidb::database::schema::{Schema, SchemaBuilder};
use meilidb::tokenizer::DefaultBuilder;
use serde_derive::{Serialize, Deserialize};
use structopt::StructOpt;
use warp::{Rejection, Filter};
use log::{error, info};
#[derive(Debug, StructOpt)]
pub struct Opt {
/// The destination where the database must be created.
#[structopt(parse(from_os_str))]
pub database_path: PathBuf,
/// The address and port to bind the server to.
#[structopt(short = "l", default_value = "127.0.0.1:8080")]
pub listen_addr: SocketAddr,
/// The path to the list of stop words (one by line).
#[structopt(long = "stop-words", parse(from_os_str))]
pub stop_words: PathBuf,
}
//
// ERRORS FOR THE MULTIDATABASE
//
#[derive(Debug)]
pub enum DatabaseError {
AlreadyExist,
NotExist,
NotFound(String),
Unknown(Box<Error>),
}
impl fmt::Display for DatabaseError {
fn fmt(&self, f: &mut fmt::Formatter) -> fmt::Result {
match self {
DatabaseError::AlreadyExist => write!(f, "File already exist"),
DatabaseError::NotExist => write!(f, "File not exist"),
DatabaseError::NotFound(ref name) => write!(f, "Database {} not found", name),
DatabaseError::Unknown(e) => write!(f, "{}", e),
}
}
}
impl Error for DatabaseError {}
impl From<Box<Error>> for DatabaseError {
fn from(e: Box<Error>) -> DatabaseError {
DatabaseError::Unknown(e)
}
}
//
// MULTIDATABASE DEFINITION
//
pub struct MultiDatabase {
databases: CHashMap<String, Database>,
db_path: PathBuf,
stop_words: HashSet<String>,
}
impl MultiDatabase {
pub fn new(path: PathBuf, stop_words: HashSet<String>) -> MultiDatabase {
MultiDatabase {
databases: CHashMap::new(),
db_path: path,
stop_words: stop_words
}
}
pub fn create(&self, name: String, schema: Schema) -> Result<(), DatabaseError> {
let rdb_name = format!("{}.mdb", name);
let database_path = self.db_path.join(rdb_name);
if database_path.exists() {
return Err(DatabaseError::AlreadyExist.into());
}
let index = Database::create(database_path, &schema)?;
self.databases.insert_new(name, index);
Ok(())
}
pub fn load(&self, name: String) -> Result<(), DatabaseError> {
let rdb_name = format!("{}.mdb", name);
let index_path = self.db_path.join(rdb_name);
if !index_path.exists() {
return Err(DatabaseError::NotExist.into());
}
let index = Database::open(index_path)?;
self.databases.insert_new(name, index);
Ok(())
}
pub fn load_existing(&self) {
let paths = match fs::read_dir(self.db_path.clone()){
Ok(p) => p,
Err(e) => {
error!("{}", e);
return
}
};
for path in paths {
let path = match path {
Ok(p) => p.path(),
Err(_) => continue
};
let path_str = match path.to_str() {
Some(p) => p,
None => continue
};
let extension = match get_extension_from_path(path_str) {
Some(e) => e,
None => continue
};
if extension != "mdb" {
continue
}
let name = match get_file_name_from_path(path_str) {
Some(f) => f,
None => continue
};
let db = match Database::open(path.clone()) {
Ok(db) => db,
Err(_) => continue
};
self.databases.insert_new(name.to_string(), db);
info!("Load database {}", name);
}
}
pub fn create_or_load(&self, name: String, schema: Schema) -> Result<(), DatabaseError> {
match self.create(name.clone(), schema) {
Err(DatabaseError::AlreadyExist) => self.load(name),
x => x,
}
}
pub fn get(&self, name: String) -> Result<ReadGuard<String, Database>, Box<Error>> {
Ok(self.databases.get(&name).ok_or(DatabaseError::NotFound(name))?)
}
}
fn get_extension_from_path(path: &str) -> Option<&str> {
Path::new(path).extension().and_then(OsStr::to_str)
}
fn get_file_name_from_path(path: &str) -> Option<&str> {
Path::new(path).file_stem().and_then(OsStr::to_str)
}
fn retrieve_stop_words(path: &Path) -> io::Result<HashSet<String>> {
let f = File::open(path)?;
let reader = BufReader::new(f);
let mut words = HashSet::new();
for line in reader.lines() {
let line = line?;
let word = line.trim().to_string();
words.insert(word);
}
Ok(words)
}
//
// PARAMS & BODY FOR HTTPS HANDLERS
//
#[derive(Deserialize)]
struct CreateBody {
name: String,
schema: SchemaBuilder,
}
#[derive(Deserialize)]
struct IngestBody {
insert: Option<Vec<HashMap<String, String>>>,
delete: Option<Vec<HashMap<String, String>>>
}
#[derive(Serialize)]
struct IngestResponse {
inserted: usize,
deleted: usize
}
#[derive(Deserialize)]
struct SearchQuery {
q: String,
limit: Option<usize>,
}
//
// HTTP ROUTES
//
// Create a new index.
// The index name should be unused and the schema valid.
//
// POST /create
// Body:
// - name: String
// - schema: JSON
// - stopwords: Vec<String>
fn create(body: CreateBody, db: Arc<MultiDatabase>) -> Result<String, Rejection> {
let schema = body.schema.build();
match db.create(body.name.clone(), schema) {
Ok(_) => Ok(format!("{} created ", body.name)),
Err(e) => {
error!("{:?}", e);
return Err(warp::reject::not_found())
}
}
}
// Ingest new document.
// It's possible to have positive or/and negative updates.
//
// PUT /:name/ingest
// Body:
// - insert: Option<Vec<JSON>>
// - delete: Option<Vec<String>>
fn ingest(index_name: String, body: IngestBody, db: Arc<MultiDatabase>) -> Result<String, Rejection> {
let schema = {
let index = match db.get(index_name.clone()){
Ok(i) => i,
Err(_) => return Err(warp::reject::not_found()),
};
let view = index.view();
view.schema().clone()
};
let tokenizer_builder = DefaultBuilder::new();
let now = match SystemTime::now().duration_since(SystemTime::UNIX_EPOCH) {
Ok(n) => n.as_secs(),
Err(_) => panic!("SystemTime before UNIX EPOCH!"),
};
let sst_name = format!("update-{}-{}.sst", index_name, now);
let sst_path = db.db_path.join(sst_name);
let mut response = IngestResponse{inserted: 0, deleted: 0};
let mut update = UpdateBuilder::new(sst_path, schema);
if let Some(documents) = body.delete {
for doc in documents {
if let Err(e) = update.remove_document(doc) {
error!("Impossible to remove document; {:?}", e);
} else {
response.deleted += 1;
}
}
}
let stop_words = &db.stop_words;
if let Some(documents) = body.insert {
for doc in documents {
if let Err(e) = update.update_document(doc, &tokenizer_builder, &stop_words) {
error!("Impossible to update document; {:?}", e);
} else {
response.inserted += 1;
}
}
}
let update = match update.build() {
Ok(u) => u,
Err(e) => {
error!("Impossible to create an update file; {:?}", e);
return Err(warp::reject::not_found())
}
};
{
let index = match db.get(index_name.clone()){
Ok(i) => i,
Err(_) => return Err(warp::reject::not_found()),
};
if let Err(e) = index.ingest_update_file(update) {
error!("Impossible to ingest sst file; {:?}", e);
return Err(warp::reject::not_found())
};
}
if let Ok(response) = serde_json::to_string(&response) {
return Ok(response);
};
return Err(warp::reject::not_found())
}
// Search in a specific index
// The default limit is 20
//
// GET /:name/search
// Params:
// - query: String
// - limit: Option<usize>
fn search(index_name: String, query: SearchQuery, db: Arc<MultiDatabase>) -> Result<String, Rejection> {
let view = {
let index = match db.get(index_name.clone()){
Ok(i) => i,
Err(_) => return Err(warp::reject::not_found()),
};
index.view()
};
let limit = query.limit.unwrap_or(20);
let query_builder = match view.query_builder() {
Ok(q) => q,
Err(_err) => return Err(warp::reject::not_found()),
};
let (time, responses) = measure_time(|| {
let docs = query_builder.query(&query.q, 0..limit);
let mut results: Vec<HashMap<String, String>> = Vec::with_capacity(limit);
for doc in docs {
match view.document_by_id(doc.id) {
Ok(val) => results.push(val),
Err(e) => println!("{:?}", e),
}
}
results
});
let response = match serde_json::to_string(&responses) {
Ok(val) => val,
Err(err) => format!("{:?}", err),
};
info!("index: {} - search: {:?} - limit: {} - time: {}", index_name, query.q, limit, time);
Ok(response)
}
fn start_server(listen_addr: SocketAddr, db: Arc<MultiDatabase>) {
let index_path = warp::path("index").and(warp::path::param::<String>());
let db = warp::any().map(move || db.clone());
let create_path = warp::path("create").and(warp::path::end());
let ingest_path = index_path.and(warp::path("ingest")).and(warp::path::end());
let search_path = index_path.and(warp::path("search")).and(warp::path::end());
let create = warp::post2()
.and(create_path)
.and(warp::body::json())
.and(db.clone())
.and_then(create);
let ingest = warp::put2()
.and(ingest_path)
.and(warp::body::json())
.and(db.clone())
.and_then(ingest);
let search = warp::get2()
.and(search_path)
.and(warp::query())
.and(db.clone())
.and_then(search);
let api = create
.or(ingest)
.or(search);
let logs = warp::log("server");
let headers = warp::reply::with::header("Content-Type", "application/json");
let routes = api.with(logs).with(headers);
info!("Server is started on {}", listen_addr);
warp::serve(routes).run(listen_addr);
}
fn main() {
env_logger::init();
let opt = Opt::from_args();
let stop_words = match retrieve_stop_words(&opt.stop_words) {
Ok(s) => s,
Err(_) => HashSet::new(),
};
let db = Arc::new(MultiDatabase::new(opt.database_path.clone(), stop_words));
db.load_existing();
start_server(opt.listen_addr, db);
}

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@ -38,6 +38,10 @@ impl DocumentKey {
DocumentKeyAttr::new(self.document_id(), attr) DocumentKeyAttr::new(self.document_id(), attr)
} }
pub fn with_attribute_min(&self) -> DocumentKeyAttr {
DocumentKeyAttr::new(self.document_id(), SchemaAttr::min())
}
pub fn with_attribute_max(&self) -> DocumentKeyAttr { pub fn with_attribute_max(&self) -> DocumentKeyAttr {
DocumentKeyAttr::new(self.document_id(), SchemaAttr::max()) DocumentKeyAttr::new(self.document_id(), SchemaAttr::max())
} }

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@ -1,17 +1,17 @@
use std::sync::{Arc, Mutex};
use std::error::Error; use std::error::Error;
use std::ops::Deref;
use std::path::Path; use std::path::Path;
use std::ops::Deref;
use std::sync::Arc;
use rocksdb::rocksdb_options::{DBOptions, IngestExternalFileOptions, ColumnFamilyOptions}; use rocksdb::rocksdb_options::{DBOptions, ColumnFamilyOptions};
use rocksdb::rocksdb::{Writable, Snapshot}; use rocksdb::rocksdb::{Writable, Snapshot};
use rocksdb::{DB, DBVector, MergeOperands}; use rocksdb::{DB, MergeOperands};
use crossbeam::atomic::ArcCell; use crossbeam::atomic::ArcCell;
use log::info; use log::info;
pub use self::document_key::{DocumentKey, DocumentKeyAttr}; pub use self::document_key::{DocumentKey, DocumentKeyAttr};
pub use self::view::{DatabaseView, DocumentIter}; pub use self::view::{DatabaseView, DocumentIter};
pub use self::update::{Update, UpdateBuilder}; pub use self::update::Update;
pub use self::serde::SerializerError; pub use self::serde::SerializerError;
pub use self::schema::Schema; pub use self::schema::Schema;
pub use self::index::Index; pub use self::index::Index;
@ -78,11 +78,7 @@ fn merge_indexes(key: &[u8], existing: Option<&[u8]>, operands: &mut MergeOperan
} }
pub struct Database { pub struct Database {
// DB is under a Mutex to sync update ingestions and separate DB update locking db: Arc<DB>,
// and DatabaseView acquiring locking in other words:
// "Block readers the minimum possible amount of time"
db: Mutex<Arc<DB>>,
// This view is updated each time the DB ingests an update // This view is updated each time the DB ingests an update
view: ArcCell<DatabaseView<Arc<DB>>>, view: ArcCell<DatabaseView<Arc<DB>>>,
} }
@ -113,7 +109,7 @@ impl Database {
let snapshot = Snapshot::new(db.clone()); let snapshot = Snapshot::new(db.clone());
let view = ArcCell::new(Arc::new(DatabaseView::new(snapshot)?)); let view = ArcCell::new(Arc::new(DatabaseView::new(snapshot)?));
Ok(Database { db: Mutex::new(db), view }) Ok(Database { db, view })
} }
pub fn open<P: AsRef<Path>>(path: P) -> Result<Database, Box<Error>> { pub fn open<P: AsRef<Path>>(path: P) -> Result<Database, Box<Error>> {
@ -137,49 +133,16 @@ impl Database {
let snapshot = Snapshot::new(db.clone()); let snapshot = Snapshot::new(db.clone());
let view = ArcCell::new(Arc::new(DatabaseView::new(snapshot)?)); let view = ArcCell::new(Arc::new(DatabaseView::new(snapshot)?));
Ok(Database { db: Mutex::new(db), view }) Ok(Database { db, view })
} }
pub fn ingest_update_file(&self, update: Update) -> Result<Arc<DatabaseView<Arc<DB>>>, Box<Error>> { pub fn update(&self) -> Result<Update, Box<Error>> {
let snapshot = { let schema = match self.db.get(DATA_SCHEMA)? {
// We must have a mutex here to ensure that update ingestions and compactions Some(value) => Schema::read_from_bin(&*value)?,
// are done atomatically and in the right order. None => panic!("Database does not contain a schema"),
// This way update ingestions will block other update ingestions without blocking view
// creations while doing the "data-index" compaction
let db = match self.db.lock() {
Ok(db) => db,
Err(e) => return Err(e.to_string().into()),
}; };
let path = update.path().to_string_lossy(); Ok(Update::new(self, schema))
let options = IngestExternalFileOptions::new();
// options.move_files(move_update);
let (elapsed, result) = elapsed::measure_time(|| {
let cf_handle = db.cf_handle("default").expect("\"default\" column family not found");
db.ingest_external_file_optimized(&cf_handle, &options, &[&path])
});
let _ = result?;
info!("ingesting update file took {}", elapsed);
Snapshot::new(db.clone())
};
let view = Arc::new(DatabaseView::new(snapshot)?);
self.view.set(view.clone());
Ok(view)
}
pub fn get(&self, key: &[u8]) -> Result<Option<DBVector>, Box<Error>> {
self.view().get(key)
}
pub fn flush(&self) -> Result<(), Box<Error>> {
match self.db.lock() {
Ok(db) => Ok(db.flush(true)?),
Err(e) => Err(e.to_string().into()),
}
} }
pub fn view(&self) -> Arc<DatabaseView<Arc<DB>>> { pub fn view(&self) -> Arc<DatabaseView<Arc<DB>>> {
@ -193,20 +156,18 @@ mod tests {
use std::error::Error; use std::error::Error;
use serde_derive::{Serialize, Deserialize}; use serde_derive::{Serialize, Deserialize};
use tempfile::tempdir;
use crate::database::schema::{SchemaBuilder, STORED, INDEXED}; use crate::database::schema::{SchemaBuilder, STORED, INDEXED};
use crate::database::update::UpdateBuilder;
use crate::tokenizer::DefaultBuilder; use crate::tokenizer::DefaultBuilder;
use super::*; use super::*;
#[test] #[test]
fn ingest_one_update_file() -> Result<(), Box<Error>> { fn ingest_one_easy_update() -> Result<(), Box<Error>> {
let dir = tempdir()?; let dir = tempfile::tempdir()?;
let stop_words = HashSet::new(); let stop_words = HashSet::new();
let rocksdb_path = dir.path().join("rocksdb.rdb"); let meilidb_path = dir.path().join("meilidb.mdb");
#[derive(Serialize, Deserialize, Debug, Clone, PartialEq, Eq)] #[derive(Serialize, Deserialize, Debug, Clone, PartialEq, Eq)]
struct SimpleDoc { struct SimpleDoc {
@ -225,9 +186,7 @@ mod tests {
builder.build() builder.build()
}; };
let database = Database::create(&rocksdb_path, &schema)?; let database = Database::create(&meilidb_path, &schema)?;
let update_path = dir.path().join("update.sst");
let doc0 = SimpleDoc { let doc0 = SimpleDoc {
id: 0, id: 0,
@ -242,20 +201,13 @@ mod tests {
timestamp: 7654321, timestamp: 7654321,
}; };
let docid0;
let docid1;
let update = {
let tokenizer_builder = DefaultBuilder::new(); let tokenizer_builder = DefaultBuilder::new();
let mut builder = UpdateBuilder::new(update_path, schema); let mut builder = database.update()?;
docid0 = builder.update_document(&doc0, &tokenizer_builder, &stop_words)?; let docid0 = builder.update_document(&doc0, &tokenizer_builder, &stop_words)?;
docid1 = builder.update_document(&doc1, &tokenizer_builder, &stop_words)?; let docid1 = builder.update_document(&doc1, &tokenizer_builder, &stop_words)?;
builder.build()? let view = builder.commit()?;
};
database.ingest_update_file(update)?;
let view = database.view();
let de_doc0: SimpleDoc = view.document_by_id(docid0)?; let de_doc0: SimpleDoc = view.document_by_id(docid0)?;
let de_doc1: SimpleDoc = view.document_by_id(docid1)?; let de_doc1: SimpleDoc = view.document_by_id(docid1)?;
@ -267,11 +219,11 @@ mod tests {
} }
#[test] #[test]
fn ingest_two_update_files() -> Result<(), Box<Error>> { fn ingest_two_easy_updates() -> Result<(), Box<Error>> {
let dir = tempdir()?; let dir = tempfile::tempdir()?;
let stop_words = HashSet::new(); let stop_words = HashSet::new();
let rocksdb_path = dir.path().join("rocksdb.rdb"); let meilidb_path = dir.path().join("meilidb.mdb");
#[derive(Serialize, Deserialize, Debug, Clone, PartialEq, Eq)] #[derive(Serialize, Deserialize, Debug, Clone, PartialEq, Eq)]
struct SimpleDoc { struct SimpleDoc {
@ -290,7 +242,7 @@ mod tests {
builder.build() builder.build()
}; };
let database = Database::create(&rocksdb_path, &schema)?; let database = Database::create(&meilidb_path, &schema)?;
let doc0 = SimpleDoc { let doc0 = SimpleDoc {
id: 0, id: 0,
@ -317,36 +269,17 @@ mod tests {
timestamp: 7654321, timestamp: 7654321,
}; };
let docid0;
let docid1;
let update1 = {
let tokenizer_builder = DefaultBuilder::new(); let tokenizer_builder = DefaultBuilder::new();
let update_path = dir.path().join("update-000.sst");
let mut builder = UpdateBuilder::new(update_path, schema.clone());
docid0 = builder.update_document(&doc0, &tokenizer_builder, &stop_words)?; let mut builder = database.update()?;
docid1 = builder.update_document(&doc1, &tokenizer_builder, &stop_words)?; let docid0 = builder.update_document(&doc0, &tokenizer_builder, &stop_words)?;
let docid1 = builder.update_document(&doc1, &tokenizer_builder, &stop_words)?;
builder.commit()?;
builder.build()? let mut builder = database.update()?;
}; let docid2 = builder.update_document(&doc2, &tokenizer_builder, &stop_words)?;
let docid3 = builder.update_document(&doc3, &tokenizer_builder, &stop_words)?;
let docid2; let view = builder.commit()?;
let docid3;
let update2 = {
let tokenizer_builder = DefaultBuilder::new();
let update_path = dir.path().join("update-001.sst");
let mut builder = UpdateBuilder::new(update_path, schema);
docid2 = builder.update_document(&doc2, &tokenizer_builder, &stop_words)?;
docid3 = builder.update_document(&doc3, &tokenizer_builder, &stop_words)?;
builder.build()?
};
database.ingest_update_file(update1)?;
database.ingest_update_file(update2)?;
let view = database.view();
let de_doc0: SimpleDoc = view.document_by_id(docid0)?; let de_doc0: SimpleDoc = view.document_by_id(docid0)?;
let de_doc1: SimpleDoc = view.document_by_id(docid1)?; let de_doc1: SimpleDoc = view.document_by_id(docid1)?;
@ -380,7 +313,6 @@ mod bench {
use rand::seq::SliceRandom; use rand::seq::SliceRandom;
use crate::tokenizer::DefaultBuilder; use crate::tokenizer::DefaultBuilder;
use crate::database::update::UpdateBuilder;
use crate::database::schema::*; use crate::database::schema::*;
use super::*; use super::*;
@ -425,9 +357,8 @@ mod bench {
description: String, description: String,
} }
let path = dir.path().join("update-000.sst");
let tokenizer_builder = DefaultBuilder; let tokenizer_builder = DefaultBuilder;
let mut builder = UpdateBuilder::new(path, schema); let mut builder = database.update()?;
let mut rng = XorShiftRng::seed_from_u64(42); let mut rng = XorShiftRng::seed_from_u64(42);
for i in 0..300 { for i in 0..300 {
@ -439,8 +370,7 @@ mod bench {
builder.update_document(&document, &tokenizer_builder, &stop_words)?; builder.update_document(&document, &tokenizer_builder, &stop_words)?;
} }
let update = builder.build()?; builder.commit()?;
database.ingest_update_file(update)?;
drop(database); drop(database);
@ -472,9 +402,8 @@ mod bench {
description: String, description: String,
} }
let path = dir.path().join("update-000.sst");
let tokenizer_builder = DefaultBuilder; let tokenizer_builder = DefaultBuilder;
let mut builder = UpdateBuilder::new(path, schema); let mut builder = database.update()?;
let mut rng = XorShiftRng::seed_from_u64(42); let mut rng = XorShiftRng::seed_from_u64(42);
for i in 0..3000 { for i in 0..3000 {
@ -486,8 +415,7 @@ mod bench {
builder.update_document(&document, &tokenizer_builder, &stop_words)?; builder.update_document(&document, &tokenizer_builder, &stop_words)?;
} }
let update = builder.build()?; builder.commit()?;
database.ingest_update_file(update)?;
drop(database); drop(database);
@ -520,9 +448,8 @@ mod bench {
description: String, description: String,
} }
let path = dir.path().join("update-000.sst");
let tokenizer_builder = DefaultBuilder; let tokenizer_builder = DefaultBuilder;
let mut builder = UpdateBuilder::new(path, schema); let mut builder = database.update()?;
let mut rng = XorShiftRng::seed_from_u64(42); let mut rng = XorShiftRng::seed_from_u64(42);
for i in 0..30_000 { for i in 0..30_000 {
@ -534,8 +461,7 @@ mod bench {
builder.update_document(&document, &tokenizer_builder, &stop_words)?; builder.update_document(&document, &tokenizer_builder, &stop_words)?;
} }
let update = builder.build()?; builder.commit()?;
database.ingest_update_file(update)?;
drop(database); drop(database);
@ -567,9 +493,8 @@ mod bench {
description: String, description: String,
} }
let path = dir.path().join("update-000.sst");
let tokenizer_builder = DefaultBuilder; let tokenizer_builder = DefaultBuilder;
let mut builder = UpdateBuilder::new(path, schema); let mut builder = database.update()?;
let mut rng = XorShiftRng::seed_from_u64(42); let mut rng = XorShiftRng::seed_from_u64(42);
for i in 0..300 { for i in 0..300 {
@ -581,8 +506,7 @@ mod bench {
builder.update_document(&document, &tokenizer_builder, &stop_words)?; builder.update_document(&document, &tokenizer_builder, &stop_words)?;
} }
let update = builder.build()?; let view = builder.commit()?;
let view = database.ingest_update_file(update)?;
bench.iter(|| { bench.iter(|| {
for q in &["a", "b", "c", "d", "e"] { for q in &["a", "b", "c", "d", "e"] {
@ -614,9 +538,8 @@ mod bench {
description: String, description: String,
} }
let path = dir.path().join("update-000.sst");
let tokenizer_builder = DefaultBuilder; let tokenizer_builder = DefaultBuilder;
let mut builder = UpdateBuilder::new(path, schema); let mut builder = database.update()?;
let mut rng = XorShiftRng::seed_from_u64(42); let mut rng = XorShiftRng::seed_from_u64(42);
for i in 0..3000 { for i in 0..3000 {
@ -628,8 +551,7 @@ mod bench {
builder.update_document(&document, &tokenizer_builder, &stop_words)?; builder.update_document(&document, &tokenizer_builder, &stop_words)?;
} }
let update = builder.build()?; let view = builder.commit()?;
let view = database.ingest_update_file(update)?;
bench.iter(|| { bench.iter(|| {
for q in &["a", "b", "c", "d", "e"] { for q in &["a", "b", "c", "d", "e"] {
@ -662,9 +584,8 @@ mod bench {
description: String, description: String,
} }
let path = dir.path().join("update-000.sst");
let tokenizer_builder = DefaultBuilder; let tokenizer_builder = DefaultBuilder;
let mut builder = UpdateBuilder::new(path, schema); let mut builder = database.update()?;
let mut rng = XorShiftRng::seed_from_u64(42); let mut rng = XorShiftRng::seed_from_u64(42);
for i in 0..30_000 { for i in 0..30_000 {
@ -676,8 +597,7 @@ mod bench {
builder.update_document(&document, &tokenizer_builder, &stop_words)?; builder.update_document(&document, &tokenizer_builder, &stop_words)?;
} }
let update = builder.build()?; let view = builder.commit()?;
let view = database.ingest_update_file(update)?;
bench.iter(|| { bench.iter(|| {
for q in &["a", "b", "c", "d", "e"] { for q in &["a", "b", "c", "d", "e"] {

View File

@ -10,15 +10,15 @@ use crate::tokenizer::TokenizerBuilder;
use crate::tokenizer::Token; use crate::tokenizer::Token;
use crate::{DocumentId, DocIndex}; use crate::{DocumentId, DocIndex};
pub struct IndexerSerializer<'a, B> { pub struct IndexerSerializer<'a, 'b, B> {
pub tokenizer_builder: &'a B, pub tokenizer_builder: &'a B,
pub update: &'a mut DocumentUpdate, pub update: &'a mut DocumentUpdate<'b>,
pub document_id: DocumentId, pub document_id: DocumentId,
pub attribute: SchemaAttr, pub attribute: SchemaAttr,
pub stop_words: &'a HashSet<String>, pub stop_words: &'a HashSet<String>,
} }
impl<'a, B> ser::Serializer for IndexerSerializer<'a, B> impl<'a, 'b, B> ser::Serializer for IndexerSerializer<'a, 'b, B>
where B: TokenizerBuilder where B: TokenizerBuilder
{ {
type Ok = (); type Ok = ();
@ -71,14 +71,14 @@ where B: TokenizerBuilder
let char_length = length; let char_length = length;
let doc_index = DocIndex { document_id, attribute, word_index, char_index, char_length }; let doc_index = DocIndex { document_id, attribute, word_index, char_index, char_length };
self.update.insert_doc_index(word_unidecoded.into_bytes(), doc_index); self.update.insert_doc_index(word_unidecoded.into_bytes(), doc_index)?;
} }
let char_index = char_index as u32; let char_index = char_index as u32;
let char_length = length; let char_length = length;
let doc_index = DocIndex { document_id, attribute, word_index, char_index, char_length }; let doc_index = DocIndex { document_id, attribute, word_index, char_index, char_length };
self.update.insert_doc_index(word_lower.into_bytes(), doc_index); self.update.insert_doc_index(word_lower.into_bytes(), doc_index)?;
} }
Ok(()) Ok(())
} }

View File

@ -56,3 +56,9 @@ impl fmt::Display for SerializerError {
} }
impl Error for SerializerError {} impl Error for SerializerError {}
impl From<String> for SerializerError {
fn from(value: String) -> SerializerError {
SerializerError::Custom(value)
}
}

View File

@ -11,15 +11,15 @@ use crate::tokenizer::TokenizerBuilder;
use crate::database::schema::Schema; use crate::database::schema::Schema;
use crate::DocumentId; use crate::DocumentId;
pub struct Serializer<'a, B> { pub struct Serializer<'a, 'b, B> {
pub schema: &'a Schema, pub schema: &'a Schema,
pub update: &'a mut DocumentUpdate, pub update: &'a mut DocumentUpdate<'b>,
pub document_id: DocumentId, pub document_id: DocumentId,
pub tokenizer_builder: &'a B, pub tokenizer_builder: &'a B,
pub stop_words: &'a HashSet<String>, pub stop_words: &'a HashSet<String>,
} }
impl<'a, B> ser::Serializer for Serializer<'a, B> impl<'a, 'b, B> ser::Serializer for Serializer<'a, 'b, B>
where B: TokenizerBuilder where B: TokenizerBuilder
{ {
type Ok = (); type Ok = ();
@ -28,8 +28,8 @@ where B: TokenizerBuilder
type SerializeTuple = ser::Impossible<Self::Ok, Self::Error>; type SerializeTuple = ser::Impossible<Self::Ok, Self::Error>;
type SerializeTupleStruct = ser::Impossible<Self::Ok, Self::Error>; type SerializeTupleStruct = ser::Impossible<Self::Ok, Self::Error>;
type SerializeTupleVariant = ser::Impossible<Self::Ok, Self::Error>; type SerializeTupleVariant = ser::Impossible<Self::Ok, Self::Error>;
type SerializeMap = MapSerializer<'a, B>; type SerializeMap = MapSerializer<'a, 'b, B>;
type SerializeStruct = StructSerializer<'a, B>; type SerializeStruct = StructSerializer<'a, 'b, B>;
type SerializeStructVariant = ser::Impossible<Self::Ok, Self::Error>; type SerializeStructVariant = ser::Impossible<Self::Ok, Self::Error>;
forward_to_unserializable_type! { forward_to_unserializable_type! {
@ -174,16 +174,16 @@ where B: TokenizerBuilder
} }
} }
pub struct MapSerializer<'a, B> { pub struct MapSerializer<'a, 'b, B> {
pub schema: &'a Schema, pub schema: &'a Schema,
pub document_id: DocumentId, pub document_id: DocumentId,
pub update: &'a mut DocumentUpdate, pub update: &'a mut DocumentUpdate<'b>,
pub tokenizer_builder: &'a B, pub tokenizer_builder: &'a B,
pub stop_words: &'a HashSet<String>, pub stop_words: &'a HashSet<String>,
pub current_key_name: Option<String>, pub current_key_name: Option<String>,
} }
impl<'a, B> ser::SerializeMap for MapSerializer<'a, B> impl<'a, 'b, B> ser::SerializeMap for MapSerializer<'a, 'b, B>
where B: TokenizerBuilder where B: TokenizerBuilder
{ {
type Ok = (); type Ok = ();
@ -207,7 +207,7 @@ where B: TokenizerBuilder
fn serialize_entry<K: ?Sized, V: ?Sized>( fn serialize_entry<K: ?Sized, V: ?Sized>(
&mut self, &mut self,
key: &K, key: &K,
value: &V value: &V,
) -> Result<(), Self::Error> ) -> Result<(), Self::Error>
where K: Serialize, V: Serialize, where K: Serialize, V: Serialize,
{ {
@ -217,7 +217,7 @@ where B: TokenizerBuilder
let props = self.schema.props(attr); let props = self.schema.props(attr);
if props.is_stored() { if props.is_stored() {
let value = bincode::serialize(value).unwrap(); let value = bincode::serialize(value).unwrap();
self.update.insert_attribute_value(attr, value); self.update.insert_attribute_value(attr, &value)?;
} }
if props.is_indexed() { if props.is_indexed() {
let serializer = IndexerSerializer { let serializer = IndexerSerializer {
@ -239,15 +239,15 @@ where B: TokenizerBuilder
} }
} }
pub struct StructSerializer<'a, B> { pub struct StructSerializer<'a, 'b, B> {
pub schema: &'a Schema, pub schema: &'a Schema,
pub document_id: DocumentId, pub document_id: DocumentId,
pub update: &'a mut DocumentUpdate, pub update: &'a mut DocumentUpdate<'b>,
pub tokenizer_builder: &'a B, pub tokenizer_builder: &'a B,
pub stop_words: &'a HashSet<String>, pub stop_words: &'a HashSet<String>,
} }
impl<'a, B> ser::SerializeStruct for StructSerializer<'a, B> impl<'a, 'b, B> ser::SerializeStruct for StructSerializer<'a, 'b, B>
where B: TokenizerBuilder where B: TokenizerBuilder
{ {
type Ok = (); type Ok = ();
@ -264,7 +264,7 @@ where B: TokenizerBuilder
let props = self.schema.props(attr); let props = self.schema.props(attr);
if props.is_stored() { if props.is_stored() {
let value = bincode::serialize(value).unwrap(); let value = bincode::serialize(value).unwrap();
self.update.insert_attribute_value(attr, value); self.update.insert_attribute_value(attr, &value)?;
} }
if props.is_indexed() { if props.is_indexed() {
let serializer = IndexerSerializer { let serializer = IndexerSerializer {

209
src/database/update.rs Normal file
View File

@ -0,0 +1,209 @@
use std::collections::{HashSet, BTreeMap};
use std::error::Error;
use std::sync::Arc;
use rocksdb::rocksdb::{DB, Writable, Snapshot, WriteBatch};
use hashbrown::hash_map::HashMap;
use serde::Serialize;
use fst::map::Map;
use sdset::Set;
use crate::database::{DATA_INDEX, Database, DatabaseView};
use crate::database::index::{Positive, PositiveBuilder, Negative};
use crate::database::document_key::{DocumentKey, DocumentKeyAttr};
use crate::database::serde::serializer::Serializer;
use crate::database::serde::SerializerError;
use crate::database::schema::SchemaAttr;
use crate::tokenizer::TokenizerBuilder;
use crate::data::{DocIds, DocIndexes};
use crate::database::schema::Schema;
use crate::{DocumentId, DocIndex};
use crate::database::index::Index;
pub type Token = Vec<u8>; // TODO could be replaced by a SmallVec
pub struct Update<'a> {
database: &'a Database,
schema: Schema,
raw_builder: RawUpdateBuilder,
}
impl<'a> Update<'a> {
pub(crate) fn new(database: &'a Database, schema: Schema) -> Update<'a> {
Update { database, schema, raw_builder: RawUpdateBuilder::new() }
}
pub fn update_document<T, B>(
&mut self,
document: T,
tokenizer_builder: &B,
stop_words: &HashSet<String>,
) -> Result<DocumentId, SerializerError>
where T: Serialize,
B: TokenizerBuilder,
{
let document_id = self.schema.document_id(&document)?;
let serializer = Serializer {
schema: &self.schema,
document_id: document_id,
tokenizer_builder: tokenizer_builder,
update: &mut self.raw_builder.document_update(document_id)?,
stop_words: stop_words,
};
document.serialize(serializer)?;
Ok(document_id)
}
pub fn remove_document<T>(&mut self, document: T) -> Result<DocumentId, SerializerError>
where T: Serialize,
{
let document_id = self.schema.document_id(&document)?;
self.raw_builder.document_update(document_id)?.remove()?;
Ok(document_id)
}
pub fn commit(self) -> Result<Arc<DatabaseView<Arc<DB>>>, Box<Error>> {
let batch = self.raw_builder.build()?;
self.database.db.write(batch)?;
let snapshot = Snapshot::new(self.database.db.clone());
let view = Arc::new(DatabaseView::new(snapshot)?);
self.database.view.set(view.clone());
Ok(view)
}
pub fn abort(self) { }
}
#[derive(Copy, Clone, PartialEq, Eq)]
enum UpdateType {
Updated,
Deleted,
}
use UpdateType::{Updated, Deleted};
pub struct RawUpdateBuilder {
documents_update: HashMap<DocumentId, UpdateType>,
indexed_words: BTreeMap<Token, Vec<DocIndex>>,
batch: WriteBatch,
}
impl RawUpdateBuilder {
pub fn new() -> RawUpdateBuilder {
RawUpdateBuilder {
documents_update: HashMap::new(),
indexed_words: BTreeMap::new(),
batch: WriteBatch::new(),
}
}
pub fn document_update(&mut self, document_id: DocumentId) -> Result<DocumentUpdate, SerializerError> {
use serde::ser::Error;
match self.documents_update.get(&document_id) {
Some(Deleted) | None => Ok(DocumentUpdate { document_id, inner: self }),
Some(Updated) => Err(SerializerError::custom(
"This document has already been removed and cannot be updated in the same update"
)),
}
}
pub fn build(self) -> Result<WriteBatch, Box<Error>> {
let negative = {
let mut removed_document_ids = Vec::new();
for (id, update_type) in self.documents_update {
if update_type == Deleted {
removed_document_ids.push(id);
}
}
removed_document_ids.sort_unstable();
let removed_document_ids = Set::new_unchecked(&removed_document_ids);
let doc_ids = DocIds::new(removed_document_ids);
Negative::new(doc_ids)
};
let positive = {
let mut positive_builder = PositiveBuilder::memory();
for (key, mut indexes) in self.indexed_words {
indexes.sort_unstable();
let indexes = Set::new_unchecked(&indexes);
positive_builder.insert(key, indexes)?;
}
let (map, indexes) = positive_builder.into_inner()?;
let map = Map::from_bytes(map)?;
let indexes = DocIndexes::from_bytes(indexes)?;
Positive::new(map, indexes)
};
let index = Index { negative, positive };
// write the data-index
let mut bytes = Vec::new();
index.write_to_bytes(&mut bytes);
self.batch.merge(DATA_INDEX, &bytes)?;
Ok(self.batch)
}
}
pub struct DocumentUpdate<'a> {
document_id: DocumentId,
inner: &'a mut RawUpdateBuilder,
}
impl<'a> DocumentUpdate<'a> {
pub fn remove(&mut self) -> Result<(), SerializerError> {
use serde::ser::Error;
if let Updated = self.inner.documents_update.entry(self.document_id).or_insert(Deleted) {
return Err(SerializerError::custom(
"This document has already been updated and cannot be removed in the same update"
));
}
let start = DocumentKey::new(self.document_id).with_attribute_min();
let end = DocumentKey::new(self.document_id).with_attribute_max(); // FIXME max + 1
self.inner.batch.delete_range(start.as_ref(), end.as_ref())?;
Ok(())
}
pub fn insert_attribute_value(&mut self, attr: SchemaAttr, value: &[u8]) -> Result<(), SerializerError> {
use serde::ser::Error;
if let Deleted = self.inner.documents_update.entry(self.document_id).or_insert(Updated) {
return Err(SerializerError::custom(
"This document has already been deleted and cannot be updated in the same update"
));
}
let key = DocumentKeyAttr::new(self.document_id, attr);
self.inner.batch.put(key.as_ref(), &value)?;
Ok(())
}
pub fn insert_doc_index(&mut self, token: Token, doc_index: DocIndex) -> Result<(), SerializerError> {
use serde::ser::Error;
if let Deleted = self.inner.documents_update.entry(self.document_id).or_insert(Updated) {
return Err(SerializerError::custom(
"This document has already been deleted and cannot be updated in the same update"
));
}
self.inner.indexed_words.entry(token).or_insert_with(Vec::new).push(doc_index);
Ok(())
}
}

View File

@ -1,64 +0,0 @@
use std::collections::HashSet;
use std::path::PathBuf;
use std::error::Error;
use serde::Serialize;
use crate::database::serde::serializer::Serializer;
use crate::database::serde::SerializerError;
use crate::tokenizer::TokenizerBuilder;
use crate::database::Schema;
use crate::DocumentId;
use super::{Update, RawUpdateBuilder};
pub struct UpdateBuilder {
schema: Schema,
raw_builder: RawUpdateBuilder,
}
impl UpdateBuilder {
pub fn new(path: PathBuf, schema: Schema) -> UpdateBuilder {
UpdateBuilder {
schema: schema,
raw_builder: RawUpdateBuilder::new(path),
}
}
pub fn update_document<T, B>(
&mut self,
document: T,
tokenizer_builder: &B,
stop_words: &HashSet<String>,
) -> Result<DocumentId, SerializerError>
where T: Serialize,
B: TokenizerBuilder,
{
let document_id = self.schema.document_id(&document)?;
let update = self.raw_builder.document_update(document_id);
let serializer = Serializer {
schema: &self.schema,
document_id: document_id,
tokenizer_builder: tokenizer_builder,
update: update,
stop_words: stop_words,
};
document.serialize(serializer)?;
Ok(document_id)
}
pub fn remove_document<T>(&mut self, document: T) -> Result<DocumentId, SerializerError>
where T: Serialize,
{
let document_id = self.schema.document_id(&document)?;
self.raw_builder.document_update(document_id).remove();
Ok(document_id)
}
pub fn build(self) -> Result<Update, Box<Error>> {
self.raw_builder.build()
}
}

View File

@ -1,17 +0,0 @@
use std::path::{Path, PathBuf};
mod builder;
mod raw_builder;
pub use self::builder::UpdateBuilder;
pub use self::raw_builder::{RawUpdateBuilder, DocumentUpdate};
pub struct Update {
sst_file: PathBuf,
}
impl Update {
pub fn path(&self) -> &Path {
&self.sst_file
}
}

View File

@ -1,170 +0,0 @@
use std::collections::btree_map::{BTreeMap, Entry};
use std::path::PathBuf;
use std::error::Error;
use rocksdb::rocksdb_options;
use hashbrown::HashMap;
use fst::map::Map;
use sdset::Set;
use log::warn;
use crate::database::index::{Index, Positive, PositiveBuilder, Negative};
use crate::database::{DATA_INDEX, DocumentKeyAttr};
use crate::database::schema::SchemaAttr;
use crate::data::{DocIds, DocIndexes};
use crate::{DocumentId, DocIndex};
use super::Update;
type Token = Vec<u8>; // TODO could be replaced by a SmallVec
type Value = Vec<u8>;
pub struct RawUpdateBuilder {
sst_file: PathBuf,
document_updates: BTreeMap<DocumentId, DocumentUpdate>,
}
pub struct DocumentUpdate {
cleared: bool,
words_indexes: HashMap<Token, Vec<DocIndex>>,
attributes: BTreeMap<SchemaAttr, Value>,
}
impl DocumentUpdate {
pub fn new() -> DocumentUpdate {
DocumentUpdate {
cleared: false,
words_indexes: HashMap::new(),
attributes: BTreeMap::new(),
}
}
pub fn remove(&mut self) {
self.cleared = true;
self.clear();
}
pub fn clear(&mut self) {
self.words_indexes.clear();
self.attributes.clear();
}
pub fn insert_attribute_value(&mut self, attr: SchemaAttr, value: Vec<u8>) {
self.attributes.insert(attr, value);
}
pub fn insert_doc_index(&mut self, token: Vec<u8>, doc_index: DocIndex) {
self.words_indexes.entry(token).or_insert_with(Vec::new).push(doc_index)
}
}
impl RawUpdateBuilder {
pub fn new(path: PathBuf) -> RawUpdateBuilder {
RawUpdateBuilder {
sst_file: path,
document_updates: BTreeMap::new(),
}
}
pub fn document_update(&mut self, document_id: DocumentId) -> &mut DocumentUpdate {
match self.document_updates.entry(document_id) {
Entry::Occupied(mut occupied) => {
warn!("Already updated document {:?}, clearing it", document_id);
occupied.get_mut().clear();
occupied.into_mut()
},
Entry::Vacant(vacant) => vacant.insert(DocumentUpdate::new()),
}
}
pub fn build(mut self) -> Result<Update, Box<Error>> {
let mut removed_document_ids = Vec::new();
let mut words_indexes = BTreeMap::new();
for (&id, update) in self.document_updates.iter_mut() {
if update.cleared { removed_document_ids.push(id) }
for (token, indexes) in &update.words_indexes {
words_indexes.entry(token).or_insert_with(Vec::new).extend_from_slice(indexes)
}
}
let negative = {
let removed_document_ids = Set::new_unchecked(&removed_document_ids);
let doc_ids = DocIds::new(removed_document_ids);
Negative::new(doc_ids)
};
let positive = {
let mut positive_builder = PositiveBuilder::memory();
for (key, mut indexes) in words_indexes {
indexes.sort_unstable();
let indexes = Set::new_unchecked(&indexes);
positive_builder.insert(key, indexes)?;
}
let (map, indexes) = positive_builder.into_inner()?;
let map = Map::from_bytes(map)?;
let indexes = DocIndexes::from_bytes(indexes)?;
Positive::new(map, indexes)
};
let index = Index { negative, positive };
let env_options = rocksdb_options::EnvOptions::new();
let column_family_options = rocksdb_options::ColumnFamilyOptions::new();
let mut file_writer = rocksdb::SstFileWriter::new(env_options, column_family_options);
file_writer.open(&self.sst_file.to_string_lossy())?;
// write the data-index
let mut bytes = Vec::new();
index.write_to_bytes(&mut bytes);
file_writer.merge(DATA_INDEX, &bytes)?;
// write all the documents attributes updates
for (id, update) in self.document_updates {
let mut last_attr: Option<SchemaAttr> = None;
for (attr, value) in update.attributes {
if update.cleared {
// if there is no last attribute, remove from the first attribute
let start_attr = match last_attr {
Some(attr) => attr.next(),
None => Some(SchemaAttr::min())
};
let start = start_attr.map(|a| DocumentKeyAttr::new(id, a));
let end = attr.prev().map(|a| DocumentKeyAttr::new(id, a));
// delete_range between (last_attr + 1) and (attr - 1)
if let (Some(start), Some(end)) = (start, end) {
file_writer.delete_range(start.as_ref(), end.as_ref())?;
}
}
let key = DocumentKeyAttr::new(id, attr);
file_writer.put(key.as_ref(), &value)?;
last_attr = Some(attr);
}
if update.cleared {
// if there is no last attribute, remove from the first attribute
let start_attr = match last_attr {
Some(attr) => attr.next(),
None => Some(SchemaAttr::min())
};
let start = start_attr.map(|a| DocumentKeyAttr::new(id, a));
let end = DocumentKeyAttr::with_attribute_max(id);
// delete_range between (last_attr + 1) and attr_max
if let Some(start) = start {
file_writer.delete_range(start.as_ref(), end.as_ref())?;
}
}
}
file_writer.finish()?;
Ok(Update { sst_file: self.sst_file })
}
}