2020-10-27 03:18:10 +08:00
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use std::borrow::Cow;
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use std::fs::File;
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use std::io::{self, Seek, SeekFrom};
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use std::sync::mpsc::sync_channel;
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use std::time::Instant;
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use anyhow::Context;
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use bstr::ByteSlice as _;
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use grenad::{Writer, Sorter, Merger, Reader, FileFuse, CompressionType};
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use heed::types::ByteSlice;
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use log::{debug, info, error};
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use rayon::prelude::*;
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use crate::index::Index;
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use self::store::Store;
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use self::merge_function::{
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main_merge, word_docids_merge, words_pairs_proximities_docids_merge,
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docid_word_positions_merge, documents_merge,
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};
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pub use self::transform::{Transform, TransformOutput};
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use super::UpdateBuilder;
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mod merge_function;
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mod store;
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mod transform;
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#[derive(Debug, Copy, Clone)]
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enum WriteMethod {
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Append,
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GetMergePut,
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}
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type MergeFn = for<'a> fn(&[u8], &[Cow<'a, [u8]>]) -> anyhow::Result<Vec<u8>>;
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fn create_writer(typ: CompressionType, level: Option<u32>, file: File) -> io::Result<Writer<File>> {
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let mut builder = Writer::builder();
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builder.compression_type(typ);
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if let Some(level) = level {
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builder.compression_level(level);
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}
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builder.build(file)
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}
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fn create_sorter(
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merge: MergeFn,
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chunk_compression_type: CompressionType,
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chunk_compression_level: Option<u32>,
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chunk_fusing_shrink_size: Option<u64>,
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max_nb_chunks: Option<usize>,
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max_memory: Option<usize>,
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) -> Sorter<MergeFn>
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{
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let mut builder = Sorter::builder(merge);
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if let Some(shrink_size) = chunk_fusing_shrink_size {
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builder.file_fusing_shrink_size(shrink_size);
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}
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builder.chunk_compression_type(chunk_compression_type);
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if let Some(level) = chunk_compression_level {
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builder.chunk_compression_level(level);
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}
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if let Some(nb_chunks) = max_nb_chunks {
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builder.max_nb_chunks(nb_chunks);
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}
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if let Some(memory) = max_memory {
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builder.max_memory(memory);
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}
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builder.build()
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}
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fn writer_into_reader(writer: Writer<File>, shrink_size: Option<u64>) -> anyhow::Result<Reader<FileFuse>> {
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let mut file = writer.into_inner()?;
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file.seek(SeekFrom::Start(0))?;
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let file = if let Some(shrink_size) = shrink_size {
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FileFuse::builder().shrink_size(shrink_size).build(file)
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} else {
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FileFuse::new(file)
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};
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Reader::new(file).map_err(Into::into)
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}
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fn merge_readers(sources: Vec<Reader<FileFuse>>, merge: MergeFn) -> Merger<FileFuse, MergeFn> {
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let mut builder = Merger::builder(merge);
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builder.extend(sources);
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builder.build()
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}
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fn merge_into_lmdb_database(
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wtxn: &mut heed::RwTxn,
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database: heed::PolyDatabase,
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sources: Vec<Reader<FileFuse>>,
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merge: MergeFn,
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method: WriteMethod,
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) -> anyhow::Result<()> {
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debug!("Merging {} MTBL stores...", sources.len());
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let before = Instant::now();
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let merger = merge_readers(sources, merge);
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let mut in_iter = merger.into_merge_iter()?;
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match method {
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WriteMethod::Append => {
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let mut out_iter = database.iter_mut::<_, ByteSlice, ByteSlice>(wtxn)?;
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while let Some((k, v)) = in_iter.next()? {
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2020-10-29 20:52:00 +08:00
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out_iter.append(k, v).with_context(|| {
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format!("writing {:?} into LMDB", k.as_bstr())
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})?;
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2020-10-27 03:18:10 +08:00
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}
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},
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WriteMethod::GetMergePut => {
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while let Some((k, v)) = in_iter.next()? {
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match database.get::<_, ByteSlice, ByteSlice>(wtxn, k)? {
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Some(old_val) => {
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let vals = vec![Cow::Borrowed(old_val), Cow::Borrowed(v)];
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let val = merge(k, &vals).expect("merge failed");
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database.put::<_, ByteSlice, ByteSlice>(wtxn, k, &val)?
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},
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None => database.put::<_, ByteSlice, ByteSlice>(wtxn, k, v)?,
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}
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}
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},
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}
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debug!("MTBL stores merged in {:.02?}!", before.elapsed());
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Ok(())
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}
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fn write_into_lmdb_database(
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wtxn: &mut heed::RwTxn,
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database: heed::PolyDatabase,
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mut reader: Reader<FileFuse>,
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merge: MergeFn,
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method: WriteMethod,
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) -> anyhow::Result<()> {
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debug!("Writing MTBL stores...");
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let before = Instant::now();
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match method {
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WriteMethod::Append => {
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let mut out_iter = database.iter_mut::<_, ByteSlice, ByteSlice>(wtxn)?;
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while let Some((k, v)) = reader.next()? {
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2020-10-29 20:52:00 +08:00
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out_iter.append(k, v).with_context(|| {
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format!("writing {:?} into LMDB", k.as_bstr())
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})?;
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2020-10-27 03:18:10 +08:00
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}
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},
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WriteMethod::GetMergePut => {
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while let Some((k, v)) = reader.next()? {
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match database.get::<_, ByteSlice, ByteSlice>(wtxn, k)? {
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Some(old_val) => {
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let vals = vec![Cow::Borrowed(old_val), Cow::Borrowed(v)];
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let val = merge(k, &vals).expect("merge failed");
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database.put::<_, ByteSlice, ByteSlice>(wtxn, k, &val)?
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},
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None => database.put::<_, ByteSlice, ByteSlice>(wtxn, k, v)?,
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}
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}
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}
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}
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debug!("MTBL stores merged in {:.02?}!", before.elapsed());
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Ok(())
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}
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2020-10-26 18:02:44 +08:00
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#[derive(Debug, Clone, Copy, PartialEq, Eq, Hash)]
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pub enum IndexDocumentsMethod {
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/// Replace the previous document with the new one,
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/// removing all the already known attributes.
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ReplaceDocuments,
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/// Merge the previous version of the document with the new version,
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/// replacing old attributes values with the new ones and add the new attributes.
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UpdateDocuments,
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}
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pub struct IndexDocuments<'t, 'u, 'i> {
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wtxn: &'t mut heed::RwTxn<'u>,
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index: &'i Index,
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2020-10-27 03:18:10 +08:00
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log_every_n: Option<usize>,
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max_nb_chunks: Option<usize>,
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max_memory: Option<usize>,
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linked_hash_map_size: Option<usize>,
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chunk_compression_type: CompressionType,
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chunk_compression_level: Option<u32>,
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chunk_fusing_shrink_size: Option<u64>,
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indexing_jobs: Option<usize>,
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2020-10-26 18:02:44 +08:00
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update_method: IndexDocumentsMethod,
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}
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impl<'t, 'u, 'i> IndexDocuments<'t, 'u, 'i> {
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pub fn new(wtxn: &'t mut heed::RwTxn<'u>, index: &'i Index) -> IndexDocuments<'t, 'u, 'i> {
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2020-10-27 03:18:10 +08:00
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IndexDocuments {
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wtxn,
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index,
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log_every_n: None,
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max_nb_chunks: None,
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max_memory: None,
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linked_hash_map_size: None,
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chunk_compression_type: CompressionType::None,
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chunk_compression_level: None,
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chunk_fusing_shrink_size: None,
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indexing_jobs: None,
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update_method: IndexDocumentsMethod::ReplaceDocuments
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}
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}
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pub(crate) fn log_every_n(&mut self, log_every_n: usize) -> &mut Self {
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self.log_every_n = Some(log_every_n);
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self
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}
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pub(crate) fn max_nb_chunks(&mut self, max_nb_chunks: usize) -> &mut Self {
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self.max_nb_chunks = Some(max_nb_chunks);
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self
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}
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pub(crate) fn max_memory(&mut self, max_memory: usize) -> &mut Self {
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self.max_memory = Some(max_memory);
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self
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}
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pub(crate) fn linked_hash_map_size(&mut self, linked_hash_map_size: usize) -> &mut Self {
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self.linked_hash_map_size = Some(linked_hash_map_size);
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self
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}
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pub(crate) fn chunk_compression_type(&mut self, chunk_compression_type: CompressionType) -> &mut Self {
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self.chunk_compression_type = chunk_compression_type;
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self
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}
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pub(crate) fn chunk_compression_level(&mut self, chunk_compression_level: u32) -> &mut Self {
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self.chunk_compression_level = Some(chunk_compression_level);
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self
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}
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pub(crate) fn chunk_fusing_shrink_size(&mut self, chunk_fusing_shrink_size: u64) -> &mut Self {
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self.chunk_fusing_shrink_size = Some(chunk_fusing_shrink_size);
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self
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}
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pub(crate) fn indexing_jobs(&mut self, indexing_jobs: usize) -> &mut Self {
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self.indexing_jobs = Some(indexing_jobs);
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self
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2020-10-26 18:02:44 +08:00
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}
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pub fn index_documents_method(&mut self, method: IndexDocumentsMethod) -> &mut Self {
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self.update_method = method;
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self
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}
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2020-10-27 03:18:10 +08:00
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pub fn execute<R, F>(self, reader: R, progress_callback: F) -> anyhow::Result<()>
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where
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R: io::Read,
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F: Fn(usize, usize) + Sync,
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{
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let before_indexing = Instant::now();
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let transform = Transform {
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rtxn: &self.wtxn,
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index: self.index,
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chunk_compression_type: self.chunk_compression_type,
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chunk_compression_level: self.chunk_compression_level,
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chunk_fusing_shrink_size: self.chunk_fusing_shrink_size,
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max_nb_chunks: self.max_nb_chunks,
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max_memory: self.max_memory,
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index_documents_method: self.update_method,
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};
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let TransformOutput {
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fields_ids_map,
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users_ids_documents_ids,
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new_documents_ids,
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replaced_documents_ids,
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documents_count,
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documents_file,
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} = transform.from_csv(reader)?;
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// We delete the documents that this document addition replaces. This way we are
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// able to simply insert all the documents even if they already exist in the database.
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if !replaced_documents_ids.is_empty() {
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let update_builder = UpdateBuilder {
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log_every_n: self.log_every_n,
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max_nb_chunks: self.max_nb_chunks,
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max_memory: self.max_memory,
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linked_hash_map_size: self.linked_hash_map_size,
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chunk_compression_type: self.chunk_compression_type,
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chunk_compression_level: self.chunk_compression_level,
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chunk_fusing_shrink_size: self.chunk_fusing_shrink_size,
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indexing_jobs: self.indexing_jobs,
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};
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let mut deletion_builder = update_builder.delete_documents(self.wtxn, self.index)?;
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deletion_builder.delete_documents(&replaced_documents_ids);
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let _deleted_documents_count = deletion_builder.execute()?;
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}
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let mmap = unsafe {
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memmap::Mmap::map(&documents_file).context("mmaping the transform documents file")?
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};
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let documents = grenad::Reader::new(mmap.as_ref())?;
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// The enum which indicates the type of the readers
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// merges that are potentially done on different threads.
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enum DatabaseType {
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Main,
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WordDocids,
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WordsPairsProximitiesDocids,
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}
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let linked_hash_map_size = self.linked_hash_map_size;
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let max_nb_chunks = self.max_nb_chunks;
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let max_memory = self.max_memory;
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let chunk_compression_type = self.chunk_compression_type;
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let chunk_compression_level = self.chunk_compression_level;
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let log_every_n = self.log_every_n;
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let chunk_fusing_shrink_size = self.chunk_fusing_shrink_size;
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let jobs = self.indexing_jobs.unwrap_or(0);
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let pool = rayon::ThreadPoolBuilder::new().num_threads(jobs).build()?;
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let (receiver, docid_word_positions_readers, documents_readers) = pool.install(|| {
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let num_threads = rayon::current_num_threads();
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let max_memory_by_job = max_memory.map(|mm| mm / num_threads);
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let readers = rayon::iter::repeatn(documents, num_threads)
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.enumerate()
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.map(|(i, documents)| {
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let store = Store::new(
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linked_hash_map_size,
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max_nb_chunks,
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max_memory_by_job,
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chunk_compression_type,
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chunk_compression_level,
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chunk_fusing_shrink_size,
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)?;
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store.index(
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documents,
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documents_count,
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i,
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num_threads,
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log_every_n,
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&progress_callback,
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)
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})
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.collect::<Result<Vec<_>, _>>()?;
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let mut main_readers = Vec::with_capacity(readers.len());
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let mut word_docids_readers = Vec::with_capacity(readers.len());
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let mut docid_word_positions_readers = Vec::with_capacity(readers.len());
|
|
|
|
let mut words_pairs_proximities_docids_readers = Vec::with_capacity(readers.len());
|
|
|
|
let mut documents_readers = Vec::with_capacity(readers.len());
|
|
|
|
readers.into_iter().for_each(|readers| {
|
|
|
|
main_readers.push(readers.main);
|
|
|
|
word_docids_readers.push(readers.word_docids);
|
|
|
|
docid_word_positions_readers.push(readers.docid_word_positions);
|
|
|
|
words_pairs_proximities_docids_readers.push(readers.words_pairs_proximities_docids);
|
|
|
|
documents_readers.push(readers.documents);
|
|
|
|
});
|
|
|
|
|
|
|
|
// This is the function that merge the readers
|
|
|
|
// by using the given merge function.
|
|
|
|
let merge_readers = move |readers, merge| {
|
|
|
|
let mut writer = tempfile::tempfile().and_then(|f| {
|
|
|
|
create_writer(chunk_compression_type, chunk_compression_level, f)
|
|
|
|
})?;
|
|
|
|
let merger = merge_readers(readers, merge);
|
|
|
|
merger.write_into(&mut writer)?;
|
|
|
|
writer_into_reader(writer, chunk_fusing_shrink_size)
|
|
|
|
};
|
|
|
|
|
|
|
|
// The enum and the channel which is used to transfert
|
|
|
|
// the readers merges potentially done on another thread.
|
|
|
|
let (sender, receiver) = sync_channel(3);
|
|
|
|
|
|
|
|
debug!("Merging the main, word docids and words pairs proximity docids in parallel...");
|
|
|
|
rayon::spawn(move || {
|
|
|
|
vec![
|
|
|
|
(DatabaseType::Main, main_readers, main_merge as MergeFn),
|
|
|
|
(DatabaseType::WordDocids, word_docids_readers, word_docids_merge),
|
|
|
|
(
|
|
|
|
DatabaseType::WordsPairsProximitiesDocids,
|
|
|
|
words_pairs_proximities_docids_readers,
|
|
|
|
words_pairs_proximities_docids_merge,
|
|
|
|
),
|
|
|
|
]
|
|
|
|
.into_par_iter()
|
|
|
|
.for_each(|(dbtype, readers, merge)| {
|
|
|
|
let result = merge_readers(readers, merge);
|
|
|
|
if let Err(e) = sender.send((dbtype, result)) {
|
|
|
|
error!("sender error: {}", e);
|
|
|
|
}
|
|
|
|
});
|
|
|
|
});
|
|
|
|
|
|
|
|
Ok((receiver, docid_word_positions_readers, documents_readers)) as anyhow::Result<_>
|
|
|
|
})?;
|
|
|
|
|
|
|
|
let mut documents_ids = self.index.documents_ids(self.wtxn)?;
|
|
|
|
let contains_documents = !documents_ids.is_empty();
|
|
|
|
let write_method = if contains_documents {
|
|
|
|
WriteMethod::GetMergePut
|
|
|
|
} else {
|
|
|
|
WriteMethod::Append
|
|
|
|
};
|
|
|
|
|
2020-10-28 18:17:36 +08:00
|
|
|
debug!("Writing using the write method: {:?}", write_method);
|
|
|
|
|
2020-10-27 03:18:10 +08:00
|
|
|
// We write the fields ids map into the main database
|
|
|
|
self.index.put_fields_ids_map(self.wtxn, &fields_ids_map)?;
|
|
|
|
|
|
|
|
// We write the users_ids_documents_ids into the main database.
|
|
|
|
self.index.put_users_ids_documents_ids(self.wtxn, &users_ids_documents_ids)?;
|
|
|
|
|
|
|
|
// We merge the new documents ids with the existing ones.
|
|
|
|
documents_ids.union_with(&new_documents_ids);
|
2020-10-29 20:52:00 +08:00
|
|
|
documents_ids.union_with(&replaced_documents_ids);
|
2020-10-27 03:18:10 +08:00
|
|
|
self.index.put_documents_ids(self.wtxn, &documents_ids)?;
|
|
|
|
|
|
|
|
debug!("Writing the docid word positions into LMDB on disk...");
|
|
|
|
merge_into_lmdb_database(
|
|
|
|
self.wtxn,
|
|
|
|
*self.index.docid_word_positions.as_polymorph(),
|
|
|
|
docid_word_positions_readers,
|
|
|
|
docid_word_positions_merge,
|
|
|
|
write_method
|
|
|
|
)?;
|
|
|
|
|
|
|
|
debug!("Writing the documents into LMDB on disk...");
|
|
|
|
merge_into_lmdb_database(
|
|
|
|
self.wtxn,
|
|
|
|
*self.index.documents.as_polymorph(),
|
|
|
|
documents_readers,
|
|
|
|
documents_merge,
|
|
|
|
write_method
|
|
|
|
)?;
|
|
|
|
|
|
|
|
for (db_type, result) in receiver {
|
|
|
|
let content = result?;
|
|
|
|
match db_type {
|
|
|
|
DatabaseType::Main => {
|
|
|
|
debug!("Writing the main elements into LMDB on disk...");
|
|
|
|
write_into_lmdb_database(
|
|
|
|
self.wtxn,
|
|
|
|
self.index.main,
|
|
|
|
content,
|
|
|
|
main_merge,
|
2020-10-29 20:52:00 +08:00
|
|
|
WriteMethod::GetMergePut,
|
2020-10-27 03:18:10 +08:00
|
|
|
)?;
|
|
|
|
},
|
|
|
|
DatabaseType::WordDocids => {
|
|
|
|
debug!("Writing the words docids into LMDB on disk...");
|
|
|
|
let db = *self.index.word_docids.as_polymorph();
|
|
|
|
write_into_lmdb_database(
|
|
|
|
self.wtxn,
|
|
|
|
db,
|
|
|
|
content,
|
|
|
|
word_docids_merge,
|
|
|
|
write_method,
|
|
|
|
)?;
|
|
|
|
},
|
|
|
|
DatabaseType::WordsPairsProximitiesDocids => {
|
|
|
|
debug!("Writing the words pairs proximities docids into LMDB on disk...");
|
|
|
|
let db = *self.index.word_pair_proximity_docids.as_polymorph();
|
|
|
|
write_into_lmdb_database(
|
|
|
|
self.wtxn,
|
|
|
|
db,
|
|
|
|
content,
|
|
|
|
words_pairs_proximities_docids_merge,
|
|
|
|
write_method,
|
|
|
|
)?;
|
|
|
|
},
|
|
|
|
}
|
|
|
|
}
|
|
|
|
|
|
|
|
info!("Update processed in {:.02?}", before_indexing.elapsed());
|
|
|
|
|
|
|
|
Ok(())
|
2020-10-26 18:02:44 +08:00
|
|
|
}
|
|
|
|
}
|